Publications

Our PhD students have published great scientific stories resulting from their discoveries. View below a selection of top first-author publications resulting from their time in the IMPRS-CellDevoSys, or search the publication database on our main Max Planck Institute webpage.

Title	Journal	Publication year
Turrero García M, Chang Y, Arai Y, Huttner WB S-phase duration is the main target of cell cycle regulation in neural progenitors of developing ferret neocortex. J Comp Neurol. 2016 Feb 15;524(3):456–70	J Comp Neurol	2016
Stapel LC, Lombardot B, Broaddus C, Kainmueller D, Jug F, Myers EW, Vastenhouw NL Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos. Development. 2016 Feb 1;143(3):540–6	Development	2016
Naganathan SR, Middelkoop TC, Fürthauer S, Grill SW Actomyosin-driven left-right asymmetry: from molecular torques to chiral self organization. Curr Opin Cell Biol. 2016 Feb;38:24–30	Curr Opin Cell Biol	2016
Lisica A, Engel C, Jahnel M, Roldán É, Galburt EA, Cramer P, Grill SW Mechanisms of backtrack recovery by RNA polymerases I and II. Proc Natl Acad Sci U S A. 2016 Feb 29. pii: 201517011	Proc Natl Acad Sci U S A	2016
Millonigg S, Minasaki R, Nousch M, Novak J, Eckmann CR Correction: GLD-4-Mediated Translational Activation Regulates the Size of the Proliferative Germ Cell Pool in the Adult C. elegans Germ Line. PLoS Genet. 2016 Feb 9;12(2):e1005862	PLoS Genet	2016
Schürmann M, Scholze J, Müller P, Guck J, Chan CJ Cell nuclei have lower refractive index and mass density than cytoplasm. J Biophotonics. 2016 Mar 24	J Biophotonics	2016
Munder MC, Midtvedt D, Franzmann T, Nüske E, Otto O, Herbig M, Ulbricht E, Müller P, Taubenberger A, Maharana S, Malinovska L, Richter D, Guck J, Zaburdaev V, Alberti S A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy. Elife. 2016 Mar 22;5. pii: e09347	Elife	2016
Afshar Y, Sbalzarini IF A Parallel Distributed-Memory Particle Method Enables Acquisition-Rate Segmentation of Large Fluorescence Microscopy Images. PLoS One. 2016 Apr 5;11(4):e0152528	PLoS One	2016
Geyer VF, Sartori P, Friedrich BM, Jülicher F, Howard J Independent Control of the Static and Dynamic Components of the Chlamydomonas Flagellar Beat. Curr Biol. 2016 Apr 25;26(8):1098–103	Curr Biol	2016
Villaseñor R, Kalaidzidis Y, Zerial M Signal processing by the endosomal system. Curr Opin Cell Biol. 2016 Apr;39:53–60	Curr Opin Cell Biol	2016
Erkut C, Gade VR, Laxman S, Kurzchalia TV The glyoxylate shunt is essential for desiccation tolerance in C. elegans and budding yeast. Elife. 2016 Apr 19;5. pii: e13614	Elife	2016
Stepanek L, Pigino G Microtubule doublets are double-track railways for intraflagellar transport trains. Science. 2016 May 6;352(6286):721–4	Science	2016
Ananthanarayanan V, Tolić IM Single-molecule imaging of cytoplasmic dynein in vivo. Methods Cell Biol. 2015;125:1–12	Methods Cell Biol	2015
Strzyz PJ, Lee HO, Sidhaye J, Weber IP, Leung LC, Norden C Interkinetic nuclear migration is centrosome independent and ensures apical cell division to maintain tissue integrity. Dev Cell. 2015 Jan 26;32(2):203–19	Dev Cell	2015
Decker F, Brugués J Dissecting microtubule structures by laser ablation. Methods Cell Biol. 2015;125:61–75	Methods Cell Biol	2015
Villaseñor R, Nonaka H, Del Conte-Zerial P, Kalaidzidis Y, Zerial M Regulation of EGFR signal transduction by analogue-to-digital conversion in endosomes. Elife. 2015 Feb 4;4	Elife	2015
Florio M, Albert M, Taverna E, Namba T, Brandl H, Lewitus E, Haffner C, Sykes A, Wong FK, Peters J, Guhr E, Klemroth S, Prüfer K, Kelso J, Naumann R, Nüsslein I, Dahl A, Lachmann R, Pääbo S, Huttner WB Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion. Science. 2015 Feb 26. pii: aaa1975	Science	2015
Heyn P, Kalinka AT, Tomancak P, Neugebauer KM Introns and gene expression: Cellular constraints, transcriptional regulation, and evolutionary consequences. Bioessays. 2015 Feb;37(2):148–54	Bioessays	2015
Begasse ML, Leaver M, Vazquez F, Grill SW, Hyman AA Temperature Dependence of Cell Division Timing Accounts for a Shift in the Thermal Limits of C. elegans and C. briggsae. Cell Rep. 2015 Feb 4. pii: S2211–1247(15)00007–8	Cell Rep	2015
Khaliullina H, Bilgin M, Sampaio JL, Shevchenko A, Eaton S Endocannabinoids are conserved inhibitors of the Hedgehog pathway. Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3415–20	Proc Natl Acad Sci U S A	2015
Bergert M, Erzberger A, Desai RA, Aspalter IM, Oates AC, Charras G, Salbreux G, Paluch EK Force transmission during adhesion-independent migration. Nat Cell Biol. 2015 Apr;17(4):524–9	Nat Cell Biol	2015
Turrero García M, Chang Y, Arai Y, Huttner WB S-phase duration is the main target of cell cycle regulation in neural progenitors of developing ferret neocortex. J Comp Neurol. 2015 May 10	J Comp Neurol	2015
Dunst S, Kazimiers T, von Zadow F, Jambor H, Sagner A, Brankatschk B, Mahmoud A, Spannl S, Tomancak P, Eaton S, Brankatschk M Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila. Dev Cell. 2015 May 4;33(3):351–65	Dev Cell	2015
Malinovska L, Palm S, Gibson K, Verbavatz JM, Alberti S Dictyostelium discoideum has a highly Q/N-rich proteome and shows an unusual resilience to protein aggregation. Proc Natl Acad Sci U S A. 2015 May 19;112(20):E2620–9	Proc Natl Acad Sci U S A	2015
Machyna M, Neugebauer KM, Staněk D Coilin: The first 25 years. RNA Biol. 2015;12(6):590–6	RNA Biol	2015
Kumichel A, Kapp K, Knust E A Conserved Di-Basic Motif of Drosophila Crumbs Contributes to Efficient ER Export. Traffic. 2015 Jun;16(6):604–16	Traffic	2015
Coelho M, Tolić IM Asymmetric damage segregation at cell division via protein aggregate fusion and attachment to organelles. Bioessays. 2015 Jul;37(7):740–7	Bioessays	2015
Kroschwald S, Maharana S, Mateju D, Malinovska L, Nüske E, Poser I, Richter D, Alberti S Promiscuous interactions and protein disaggregases determine the material state of stress-inducible RNP granules. Elife. 2015 Aug 4;4:e06807	Elife	2015
Wong FK, Fei JF, Mora-Bermúdez F, Taverna E, Haffner C, Fu J, Anastassiadis K, Stewart AF, Huttner WB Sustained Pax6 Expression Generates Primate-like Basal Radial Glia in Developing Mouse Neocortex. PLoS Biol. 2015 Aug 7;13(8):e1002217	PLoS Biol	2015
Erkut C, Kurzchalia TV The C. elegans dauer larva as a paradigm to study metabolic suppression and desiccation tolerance. Planta. 2015 Aug;242(2):389–96	Planta	2015
Herzel L, Neugebauer KM Quantification of co-transcriptional splicing from RNA-Seq data. Methods. 2015 Sep 1;85:36–43	Methods	2015
Jahr W, Schmid B, Schmied C, Fahrbach FO, Huisken J Hyperspectral light sheet microscopy. Nat Commun. 2015 Sep 2;6:7990	Nat Commun	2015
Malinovska L, Alberti S Protein misfolding in Dictyostelium: using a freak of nature to gain insight into a universal problem. Prion. 2015 Nov 3:0	Prion	2015
Lavrynenko O, Rodenfels J, Carvalho M, Dye NA, Lafont R, Eaton S, Shevchenko A The ecdysteroidome of Drosophila: influence of diet and development. Development. 2015 Nov 1;142(21):3758–68	Development	2015
Hibbel A, Bogdanova A, Mahamdeh M, Jannasch A, Storch M, Schäffer E, Liakopoulos D, Howard J Kinesin Kip2 enhances microtubule growth in vitro through length-dependent feedback on polymerization and catastrophe. Elife. 2015 Nov 18;4. pii: e10542	Elife	2015
Schmied C, Steinbach P, Pietzsch T, Preibisch S, Tomancak P An automated workflow for parallel processing of large multiview SPIM recordings. Bioinformatics. 2015 Dec 1. pii: btv706	Bioinformatics	2015
Weber M, Huisken J In vivo imaging of cardiac development and function in zebrafish using light sheet microscopy. Swiss Med Wkly. 2015 Dec 23;145:w14227	Swiss Med Wkly	2015
Lin YH, Currinn H, Pocha SM, Rothnie A, Wassmer T, Knust E AP-2-complex-mediated endocytosis of Drosophila Crumbs regulates polarity by antagonizing Stardust. J Cell Sci. 2015 Dec 15;128(24):4538–49	J Cell Sci	2015
Morales-Navarrete H, Segovia-Miranda F, Klukowski P, Meyer K, Nonaka H, Marsico G, Chernykh M, Kalaidzidis A, Zerial M, Kalaidzidis Y A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture. Elife. 2015 Dec 27;4. pii: e11214	Elife	2015
Luz M, Spannl-Müller S, Ozhan G, Kagermeier-Schenk B, Rhinn M, Weidinger G, Brand M Dynamic Association with Donor Cell Filopodia and Lipid-Modification Are Essential Features of Wnt8a during Patterning of the Zebrafish Neuroectoderm. PLoS One. 2014 Jan 10;9(1):e84922	PLoS One	2014
Heyn P, Kircher M, Dahl A, Kelso J, Tomancak P, Kalinka AT, Neugebauer KM The earliest transcribed zygotic genes are short, newly evolved, and different across species. Cell Rep. 2014 Jan 30;6(2):285–92	Cell Rep	2014
Weber M, Mickoleit M, Huisken J Multilayer mounting for long-term light sheet microscopy of zebrafish. J Vis Exp. 2014 Feb 27;(84):e51119	J Vis Exp	2014
Stapel LC, Vastenhouw NL Message control in developmental transitions; deciphering chromatin's role using zebrafish genomics. Brief Funct Genomics. 2014 Mar;13(2):106–20	Brief Funct Genomics	2014
Kumichel A, Knust E Apical localisation of crumbs in the boundary cells of the Drosophila hindgut is independent of its canonical interaction partner stardust. PLoS One. 2014 Apr 7;9(4):e94038	PLoS One	2014
Gurudev N, Yuan M, Knust E Chaoptin, prominin, eyes shut and crumbs form a genetic network controlling the apical compartment of Drosophila photoreceptor cells. Biol Open. 2014 Apr 4;3(5):332–41	Biol Open	2014
Weber IP, Ramos AP, Strzyz PJ, Leung LC, Young S, Norden C Mitotic position and morphology of committed precursor cells in the zebrafish retina adapt to architectural changes upon tissue maturation. Cell Rep. 2014 Apr 24;7(2):386–97	Cell Rep	2014
Wong FK, Haffner C, Huttner WB, Taverna E Microinjection of membrane-impermeable molecules into single neural stem cells in brain tissue. Nat Protoc. 2014 May;9(5):1170–82	Nat Protoc	2014
Clark AG, Wartlick O, Salbreux G, Paluch EK Stresses at the cell surface during animal cell morphogenesis. Curr Biol. 2014 May 19;24(10):R484–94	Curr Biol	2014
Swierczynska MM, Mateska I, Peitzsch M2, Bornstein SR, Chavakis T, Eisenhofer G, Lamounier-Zepter V, Eaton S Changes in morphology and function of adrenal cortex in mice fed a high-fat diet. Int J Obes (Lond). 2014 Jun 12	Int J Obes (Lond)	2014
Florio M, Huttner WB Neural progenitors, neurogenesis and the evolution of the neocortex. Development. 2014 Jun;141(11):2182–94	Development	2014
Coelho M, Lade SJ, Alberti S, Gross T, Tolić IM Fusion of protein aggregates facilitates asymmetric damage segregation. PLoS Biol. 2014 Jun 17;12(6):e1001886	PLoS Biol	2014
Mickoleit M, Schmid B, Weber M, Fahrbach FO, Hombach S, Reischauer S, Huisken J High-resolution reconstruction of the beating zebrafish heart. Nat Methods. 2014 Sep;11(9):919–22	Nat Methods	2014
Millonigg S, Minasaki R, Nousch M, Eckmann CR GLD-4-mediated translational activation regulates the size of the proliferative germ cell pool in the adult C. elegans germ line. PLoS Genet. 2014 Sep 25;10(9):e1004647	PLoS Genet	2014
Podolski M, Mahamdeh M, Howard J Stu2, the budding yeast XMAP215/Dis1 homolog, promotes assembly of yeast microtubules by increasing growth rate and decreasing catastrophe frequency. J Biol Chem. 2014 Oct 10;289(41):28087–93	J Biol Chem	2014
Wueseke O, Bunkenborg J, Hein MY, Zinke A, Viscardi V, Woodruff JB, Oegema K, Mann M, Andersen JS, Hyman AA The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix. Mol Biol Cell. 2014 Oct 1;25(19):2984–92	Mol Biol Cell	2014
Perini ED, Schaefer R, Stöter M, Kalaidzidis Y, Zerial M Mammalian CORVET is required for fusion and conversion of distinct early endosome subpopulations. Traffic. 2014 Dec;15(12):1366–89	Traffic	2014
Rodenfels J, Lavrynenko O, Ayciriex S, Sampaio JL, Carvalho M, Shevchenko A, Eaton S Production of systemically circulating Hedgehog by the intestine couples nutrition to growth and development. Genes Dev. 2014 Dec 1;28(23):2636–51	Genes Dev	2014
Weber M, Mickoleit M, Huisken J Light sheet microscopy. Methods Cell Biol. 2014;123:193–215	Methods Cell Biol	2014
Planas-Paz L, Lammert E Mechanosensing in developing lymphatic vessels. Adv Anat Embryol Cell Biol. 2014;214:23–40	Adv Anat Embryol Cell Bio	2014
Bieberstein NI, Straube K, Neugebauer KM Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing. Methods Mol Biol. 2014;1126:315–23	Methods Mol Biol	2014
Schmied C, Stamataki E, Tomancak P Open-source solutions for SPIMage processing. Methods Cell Biol. 2014;123:505–29	Methods Cell Biol	2014
Gurudev N, Florek M, Corbeil D, Knust E Prominent role of prominin in the retina. Adv Exp Med Biol. 2013;777:55–71	Adv Exp Med Biol	2013
Machyna M, Heyn P, Neugebauer KM Cajal bodies: where form meets function. Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):17–34	Wiley Interdiscip Rev RNA	2013
Kragl M, Roensch K, Nüsslein I, Tazaki A, Taniguchi Y, Tarui H, Hayashi T, Agata K, Tanaka EM Muscle and connective tissue progenitor populations show distinct Twist1 and Twist3 expression profiles during axolotl limb regeneration. Dev Biol. 2013 Jan 1;373(1):196–204	Dev Biol	2013
Kalinina I, Nandi A, Delivani P, Chacón MR, Klemm AH, Ramunno-Johnson D, Krull A, Lindner B, Pavin N, Tolić-Nørrelykke IM Pivoting of microtubules around the spindle pole accelerates kinetochore capture. Nat Cell Biol. 2013 Jan;15(1):82–7	Nat Cell Biol	2013
Karimova M, Abi-Ghanem J, Berger N, Surendranath V, Pisabarro MT, Buchholz F Vika/vox, a novel efficient and specific Cre/loxP-like site-specific recombination system. Nucleic Acids Res. 2013 Jan;41(2):e37	Nucleic Acids Res	2013
Nacu E, Glausch M, Le HQ, Damanik FF, Schuez M, Knapp D, Khattak S, Richter T, Tanaka EM Connective tissue cells, but not muscle cells, are involved in establishing the proximo-distal outcome of limb regeneration in the axolotl. Development. 2013 Feb 1;140(3):513–8	Development	2013
Stevanovic A, Thiele C Monotopic topology is required for lipid droplet targeting of ancient ubiquitous protein 1. J Lipid Res. 2013 Feb;54(2):503–13	J Lipid Res	2013
Rostovskaya M, Naumann R, Fu J, Obst M, Mueller D, Stewart AF, Anastassiadis K Transposon mediated BAC transgenesis via pronuclear injection of mouse zygotes. Genesis. 2013 Feb;51(2):135–41	Genesis	2013
Firmino J, Tinevez JY, Knust E Crumbs affects protein dynamics in anterior regions of the developing Drosophila embryo. PLoS One. 2013;8(3):e58839	PLoS One	2013
Palm W, Swierczynska MM, Kumari V, Ehrhart-Bornstein M, Bornstein SR, Eaton S Secretion and signaling activities of lipoprotein-associated hedgehog and non-sterol-modified hedgehog in flies and mammals. PLoS Biol. 2013 Mar;11(3):e1001505	PLoS Biol	2013
Brugiolo M, Herzel L, Neugebauer KM Counting on co-transcriptional splicing. F1000Prime Rep. 2013 Apr 2;5:9	F1000Prime Rep	2013
Coelho M, Maghelli N, Tolić-Nørrelykke IM Single-molecule imaging in vivo: the dancing building blocks of the cell. Integr Biol (Camb). 2013 Apr 29;5(5):748–58	Integr Biol	2013
Gracida X, Eckmann CR Fertility and germline stem cell maintenance under different diets requires nhr-114/HNF4 in C. elegans. Curr Biol. 2013 Apr 8;23(7):607–13	Curr Biol	2013
Grotek B, Wehner D, Weidinger G Notch signaling coordinates cellular proliferation with differentiation during zebrafish fin regeneration. Development. 2013 Apr;140(7):1412–23	Development	2013
Planas-Paz L, Lammert E Mechanical forces in lymphatic vascular development and disease. Cell Mol Life Sci. 2013 May 12	Cell Mol Life Sci	2013
Malinovska L, Kroschwald S, Alberti S Protein disorder, prion propensities, and self-organizing macromolecular collectives. Biochim Biophys Acta. 2013 May;1834(5):918–31	Biochim Biophys Acta	2013
Kappei D, Butter F, Benda C, Scheibe M, Draškovič I, Stevense M, Novo CL, Basquin C, Araki M, Araki K, Krastev DB, Kittler R, Jessberger R, Londoño-Vallejo JA, Mann M, Buchholz F HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment. EMBO J. 2013 May 17	EMBO J	2013
Kelava I, Lewitus E, Huttner WB The secondary loss of gyrencephaly as an example of evolutionary phenotypical reversal. Front Neuroanat. 2013 Jun 26;7:16	Front Neuroanat	2013
Chwastek G, Schwille P A monolayer assay tailored to investigate lipid-protein systems. Chemphyschem. 2013 Jun 24;14(9):1877–81	Chemphyschem	2013
Özhan G, Sezgin E, Wehner D, Pfister AS, Kühl SJ, Kagermeier-Schenk B, Kühl M, Schwille P, Weidinger G Lypd6 enhances Wnt/β-catenin signaling by promoting Lrp6 phosphorylation in raft plasma membrane domains. Dev Cell. 2013 Aug 26;26(4):331–45	Dev Cell	2013
Lavrynenko O, Nedielkov R, Möller HM, Shevchenko A Girard derivatization for LC-MS/MS profiling of endogenous ecdysteroids in Drosophila. J Lipid Res. 2013 Aug;54(8):2265–72	J Lipid Res	2013
Ananthanarayanan V, Schattat M, Vogel SK, Krull A, Pavin N, Tolić-Nørrelykke IM Dynein motion switches from diffusive to directed upon cortical anchoring. Cell. 2013 Jun 20;153(7):1526–36	Cell	2013
Clark AG, Dierkes K, Paluch EK Monitoring actin cortex thickness in live cells. Biophys J. 2013 Aug 6;105(3):570–80	Biophys J	2013
Liu SY, Selck C, Friedrich B, Lutz R, Vila-Farré M, Dahl A, Brandl H, Lakshmanaperumal N, Henry I, Rink JC Reactivating head regrowth in a regeneration-deficient planarian species. Nature. 2013 Aug 1;500(7460):81–4	Nature	2013
Trushko A, Schäffer E, Howard J The growth speed of microtubules with XMAP215-coated beads coupled to their ends is increased by tensile force. Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14670–5	Proc Natl Acad Sci U S A	2013
Geyer VF, Jülicher F, Howard J, Friedrich BM Cell-body rocking is a dominant mechanism for flagellar synchronization in a swimming alga. Proc Natl Acad Sci U S A. 2013 Nov 5;110(45):18058–63	Proc Natl Acad Sci U S A	2013
Biro M, Romeo Y, Kroschwald S, Bovellan M, Boden A, Tcherkezian J, Roux PP, Charras G, Paluch EK Cell cortex composition and homeostasis resolved by integrating proteomics and quantitative imaging. Cytoskeleton (Hoboken). 2013 Oct 17	Cytoskeleton	2013
Coelho M, Dereli A, Haese A, Kühn S, Malinovska L, Desantis ME, Shorter J, Alberti S, Gross T, Tolić-Nørrelykke IM Fission Yeast Does Not Age under Favorable Conditions, but Does So after Stress. Curr Biol. 2013 Oct 7;23(19):1844–52	Curr Biol	2013
Gupta M, Brand M Identification and Expression Analysis of Zebrafish Glypicans during Embryonic Development. PLoS One. 2013 Nov 14;8(11):e80824	PLoS One	2013
Erkut C, Vasilj A, Boland S, Habermann B, Shevchenko A, Kurzchalia TV Molecular Strategies of the Caenorhabditis elegans Dauer Larva to Survive Extreme Desiccation. PLoS One. 2013 Dec 4;8(12):e82473	PLoS One	2013
Gerl MJ, Sampaio JL, Urban S, Kalvodova L, Verbavatz JM, Binnington B, Lindemann D, Lingwood CA, Shevchenko A, Schroeder C, Simons K Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane. J Cell Biol. 2012 Jan 23;196(2):213–21	J Cell Biol	2012
Ganz J, Kaslin J, Freudenreich D, Machate A, Geffarth M, Brand M Subdivisions of the adult zebrafish subpallium by molecular marker analysis. J Comp Neurol. 2012 Feb 15;520(3):633–55	J Comp Neurol	2012
Chakraborty D, Kappei D, Theis M, Nitzsche A, Ding L, Paszkowski-Rogacz M, Surendranath V, Berger N, Schulz H, Saar K, Hubner N, Buchholz F Combined RNAi and localization for functionally dissecting long noncoding RNAs. Nat Methods. 2012 Feb 12;9(4):360–2	Nat Methods	2012
Kelava I, Reillo I, Murayama AY, Kalinka AT, Stenzel D, Tomancak P, Matsuzaki F, Lebrand C, Sasaki E, Schwamborn JC, Okano H, Huttner WB, Borrell V Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus. Cereb Cortex. 2012 Feb;22(2):469–81	Cereb Cortex	2012
Betaneli V, Petrov EP, Schwille P The role of lipids in VDAC oligomerization. Biophys J. 2012 Feb 8;102(3):523–31	Biophys J	2012
Sezgin E, Levental I, Grzybek M, Schwarzmann G, Mueller V, Honigmann A, Belov VN, Eggeling C, Coskun U, Simons K, Schwille P Partitioning, diffusion, and ligand binding of raft lipid analogs in model and cellular plasma membranes. Biochim Biophys Acta. 2012 Mar 17;1818(7):1777–1784	Biochim Biophys Acta	2012
Klose C, Surma MA, Gerl MJ, Meyenhofer F, Shevchenko A, Simons K Flexibility of a eukaryotic lipidome – insights from yeast lipidomics. PLoS One. 2012;7(4):e35063	PLoS One	2012
Aliee M, Röper JC, Landsberg KP, Pentzold C, Widmann TJ, Jülicher F, Dahmann Physical mechanisms shaping the Drosophila dorsoventral compartment boundary. C. Curr Biol. 2012 May 2	Curr Biol	2012
Winter JF, Höpfner S, Korn K, Farnung BO, Bradshaw CR, Marsico G, Volkmer M, Habermann B, Zerial M Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity. Nat Cell Biol. 2012 May 27	Nat Cell Biol	2012
Sezgin E, Kaiser HJ, Baumgart T, Schwille P, Simons K, Levental I Elucidating membrane structure and protein behavior using giant plasma membrane vesicles. Nat Protoc. 2012 May 3;7(6):1042–51	Nat Protoc	2012
Saalfeld S, Fetter R, Cardona A, Tomancak P Elastic volume reconstruction from series of ultra-thin microscopy sections. Nat Methods. 2012 Jun 10;9(7):717–20	Nat Methods	2012
Weber M, Huisken J Omnidirectional microscopy. Nat Methods. 2012 Jun 28;9(7):656–7	Nat Methods	2012
Palm W, Sampaio JL, Brankatschk M, Carvalho M, Mahmoud A, Shevchenko A, Eaton S Lipoproteins in Drosophila melanogaster--assembly, function, and influence on tissue lipid composition. PLoS Genet. 2012 Jul;8(7):e1002828	PLoS Genet	2012
Schröter C, Ares S, Morelli LG, Isakova A, Hens K, Soroldoni D, Gajewski M, Jülicher F, Maerkl SJ, Deplancke B, Oates AC Topology and dynamics of the zebrafish segmentation clock core circuit. PLoS Biol. 2012 Jul;10(7):e1001364	PLoS Biol	2012
Bormuth V, Nitzsche B, Ruhnow F, Mitra A, Storch M, Rammner B, Howard J, Diez S The highly processive kinesin-8, Kip3, switches microtubule protofilaments with a bias toward the left. Biophys J. 2012 Jul 3;103(1):L4–6	Biophys J	2012
Vasilj A, Gentzel M, Ueberham E, Gebhardt R, Shevchenko A Tissue proteomics by one-dimensional gel electrophoresis combined with label-free protein quantification. J Proteome Res. 2012 Jul 6;11(7):3680–9	J Proteome Res	2012
Fietz SA, Lachmann R, Brandl H, Kircher M, Samusik N, Schröder R, Lakshmanaperumal N, Henry I, Vogt J, Riehn A, Distler W, Nitsch R, Enard W, Pääbo S, Huttner WB Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11836–41	Proc Natl Acad Sci U S A	2012
Bieberstein NI, Oesterreich FC, Straube K, Neugebauer KM First exon length controls active chromatin signatures and transcription. Cell Rep. 2012 Jul 26;2(1):62–8	Cell Rep	2012
Carvalho M, Sampaio JL, Palm W, Brankatschk M, Eaton S, Shevchenko A Effects of diet and development on the Drosophila lipidome. Mol Syst Biol. 2012 Jul 31;8:600	Mol Syst Bio	2012
Malinovska L, Kroschwald S, Munder MC, Richter D, Alberti S Molecular chaperones and stress-inducible protein-sorting factors coordinate the spatiotemporal distribution of protein aggregates. Mol Biol Cell. 2012 Aug;23(16):3041–56	Mol Biol Cell	2012
Surma MA, Klose C, Simons K Lipid-dependent protein sorting at the trans-Golgi network. Biochim Biophys Acta. 2012 Aug;1821(8):1059–67	Biochim Biophys Acta	2012
Sezgin E, Schwille P Model membrane platforms to study protein-membrane interactions. Mol Membr Biol. 2012 Aug;29(5):144–54	Mol Membr Biol	2012
Arumugam S, Chwastek G, Fischer-Friedrich E, Ehrig C, Mönch I, Schwille P Surface Topology Engineering of Membranes for the Mechanical Investigation of the Tubulin Homologue FtsZ. Angew Chem Int Ed Engl. 2012 Aug 31	Angew Chem Int Ed Engl	2012
Kaufmann A, Mickoleit M, Weber M, Huisken J Multilayer mounting enables long-term imaging of zebrafish development in a light sheet microscope. Development. 2012 Sep;139(17):3242–7	Development	2012
Betaneli V, Worch R, Schwille P Effect of temperature on the formation of liquid phase-separating giant unilamellar vesicles (GUV). Chem Phys Lipids. 2012 Sep;165(6):630–7	Chem Phys Lipids	2012
Bergert M, Chandradoss SD, Desai RA, Paluch E Cell mechanics control rapid transitions between blebs and lamellipodia during migration. Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14434–9	Proc Natl Acad Sci U S A	2012
Okaz E, Argüello-Miranda O, Bogdanova A, Vinod PK, Lipp JJ, Markova Z, Zagoriy I, Novak B, Zachariae W Meiotic prophase requires proteolysis of M phase regulators mediated by the meiosis-specific APC/CAma1. Cell. 2012 Oct 26;151(3):603–18	Cell	2012
Behrndt M, Salbreux G, Campinho P, Hauschild R, Oswald F, Roensch J, Grill SW, Heisenberg CP Forces driving epithelial spreading in zebrafish gastrulation. Science. 2012 Oct 12;338(6104):257–60	Science	2012
Maître JL, Berthoumieux H, Krens SF, Salbreux G, Jülicher F, Paluch E, Heisenberg CP Adhesion Functions in Cell Sorting by Mechanically Coupling the Cortices of Adhering Cells. Science. 2012 Oct 12;338(6104):253–6	Science	2012
Rostovskaya M, Fu J, Obst M, Baer I, Weidlich S, Wang H, Smith AJ, Anastassiadis K, Stewart AF Transposon-mediated BAC transgenesis in human ES cells. Nucleic Acids Res. 2012 Oct 1;40(19):e150	Nucleic Acids Res	2012
Kragl M, Roensch K, Nüsslein I, Tazaki A, Taniguchi Y, Tarui H, Hayashi T, Agata K, Tanaka EM Muscle and connective tissue progenitor populations show distinct Twist1 and Twist3 expression profiles during axolotl limb regeneration. Dev Biol. 2012 Oct 24. pii: S0012–1606(12)00576–3	Dev Biol	2012
Pan-Montojo F, Schwarz M, Winkler C, Arnhold M, O'Sullivan GA, Pal A, Said J, Marsico G, Verbavatz JM, Rodrigo-Angulo M, Gille G, Funk RH, Reichmann H Environmental toxins trigger PD-like progression via increased alpha-synuclein release from enteric neurons in mice. Sci Rep. 2012;2:898	Sci Rep	2012
Kayserili MA, Gerrard DT, Tomancak P, Kalinka AT An excess of gene expression divergence on the X chromosome in Drosophila embryos: implications for the faster-X hypothesis. PLoS Genet. 2012;8(12):e1003200	PLoS Genet	2012
Rostovskaya M, Anastassiadis K Differential expression of surface markers in mouse bone marrow mesenchymal stromal cell subpopulations with distinct lineage commitment. PLoS One. 2012;7(12):e51221	PLoS One	2012
Coelho M, Tolić-Nørrelykke IM Refreshed but vulnerable: yeast daughter cells are more sensitive to stress than young mothers. Cell Cycle. 2011 Jan 1;10(1):16–7	Cell Cycle	2011
Riedel F, Vorkel D, Eaton S Megalin-dependent yellow endocytosis restricts melanization in the Drosophila cuticle. Development. 2011 Jan;138(1):149–58	Development	2011
Fietz SA, Huttner WB., Cortical progenitor expansion, self-renewal and neurogenesis-a polarized perspective. Curr Opin Neurobiol. 2011 Feb;21(1):23–35	Curr Opin Neurobiol	2011
Spandl J, Lohmann D, Kuerschner L, Moessinger C, Thiele C., Ancient ubiquitous protein 1 (AUP1) localizes to lipid droplets and binds the E2 ubiquitin conjugase G2 (Ube2g2) via its G2 binding region. J Biol Chem. 2011 Feb 18;286(7):5599–606	J Biol Chem	2011
Poulet C, Wettwer E, Christ T, Ravens U Skeletal muscle stem cells propagated as myospheres display electrophysiological properties modulated by culture conditions. J Mol Cell Cardiol. 2011 Feb;50(2):357–66	J Mol Cell Cardiol	2011
Ciotta G, Hofemeister H, Maresca M, Fu J, Sarov M, Anastassiadis K, Stewart AF Recombineering BAC transgenes for protein tagging. Methods. 2011 Feb;53(2):113–9	Methods	2011
Suckale J, Wendling O, Masjkur J, Jäger M, Münster C, Anastassiadis K, Stewart AF, Solimena M PTBP1 is required for embryonic development before gastrulation. PLoS One. 2011 Feb 17;6(2):e16992	PLoS One	2011
Sampaio JL, Gerl MJ, Klose C, Ejsing CS, Beug H, Simons K, Shevchenko A Membrane lipidome of an epithelial cell line. Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):1903–7	Proc Natl Acad Sci	2011
Fonseca AV, Corbeil D The hematopoietic stem cell polarization and migration: A dynamic link between RhoA signaling pathway, microtubule network and ganglioside-based membrane microdomains. Commun Integr Biol. 2011 Mar;4(2):201–4.G382	Commun Integr Biol	2011
Oswald A, Oates AC Control of endogenous gene expression timing by introns. Genome Biol. 2011 Mar 29;12(3):107	Genome Biol	2011
Redemann S, Schloissnig S, Ernst S, Pozniakowsky A, Ayloo S, Hyman AA, Bringmann H Codon adaptation-based control of protein expression in C. elegans. Nat Methods. 2011 Mar;8(3):250–2	Nat Methods	2011
Jahnel M, Behrndt M, Jannasch A, Schäffer E, Grill SW Measuring the complete force field of an optical trap. Opt Lett. 2011 Apr 1;36(7):1260–2	Opt Lett	2011
Tomczak A, Teresa Pisabarro M Identification of CCR2-binding features in Cytl1 by a CCL2-like chemokine model. Proteins. 2011 Apr;79(4):1277–92	Proteins	2011
Roellig D, Morelli LG, Ares S, Jülicher F, Oates AC SnapShot: The Segmentation Clock. Cell. 2011 May 27;145(5):800–800	Cell	2011
Knopf F, Hammond C, Chekuru A, Kurth T, Hans S, Weber CW, Mahatma G, Fisher S, Brand M, Schulte-Merker S, Weidinger G Bone Regenerates via Dedifferentiation of Osteoblasts in the Zebrafish Fin. Dev Cell. 2011 May 17;20(5):713–24	Dev Cell	2011
Bauer N, Wilsch-Bräuninger M, Karbanová J, Fonseca AV, Strauss D, Freund D, Thiele C, Huttner WB, Bornhäuser M, Corbeil D Haematopoietic stem cell differentiation promotes the release of prominin-1/CD133-containing membrane vesicles-a role of the endocytic-exocytic pathway. EMBO Mol Med. 2011 May 18	EMBO Mol Med	2011
Lingwood D, Binnington B, Róg T, Vattulainen I, Grzybek M, Coskun U, Lingwood CA, Simons K Cholesterol modulates glycolipid conformation and receptor activity. Nat Chem Biol. 2011 May;7(5):260–2	Nat Chem Biol	2011
Loose M, Fischer-Friedrich E, Herold C, Kruse K, Schwille P Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. Nat Struct Mol Biol. 2011 May;18(5):577–83	Nat Struct Mol Biol	2011
Nitzsche A, Paszkowski-Rogacz M, Matarese F, Janssen-Megens EM, Hubner NC, Schulz H, de Vries I, Ding L, Huebner N, Mann M, Stunnenberg HG, Buchholz F RAD21 Cooperates with Pluripotency Transcription Factors in the Maintenance of Embryonic Stem Cell Identity. PLoS One. 2011 May 12;6(5):e19470	PLoS One	2011
Clark AG, Paluch E Mechanics and regulation of cell shape during the cell cycle. Results Probl Cell Differ. 2011;53:31–73	Results Probl Cell Differ	2011
Surma MA, Klose C, Klemm RW, Ejsing CS, Simons K Generic Sorting of Raft Lipids into Secretory Vesicles in Yeast. Traffic. 2011 May 17	Traffic	2011
Arumugam S, Chwastek G, Schwille P Protein-membrane interactions: the virtue of minimal systems in systems biology. Wiley Interdiscip Rev Syst Biol Med. 2011 May-Jun;3(3):269–80	WIRES SYST BIOL MED	2011
Loose M, Kruse K, Schwille P Protein self-organization: lessons from the min system. Annu Rev Biophys. 2011 Jun 9;40:315–36	Annu Rev Biophys	2011
Ohrt T, Staroske W, Mütze J, Crell K, Landthaler M, Schwille P Fluorescence Cross-Correlation Spectroscopy Reveals Mechanistic Insights into the Effect of 2'-O-Methyl Modified siRNAs in Living Cells. Biophys J. 2011 Jun 22;100(12):2981–90	Biophys J	2011
Moessinger C, Kuerschner L, Spandl J, Shevchenko A, Thiele C Human lysophosphatidylcholine acyltransferases 1 and 2 are located in lipid droplets where they catalyze the formation of phosphatidylcholine. J Biol Chem. 2011 Jun 17;286(24):21330–9	J Biol Chem	2011
Stamova S, Cartellieri M, Feldmann A, Bippes CC, Bartsch H, Wehner R, Schmitz M, von Bonin M, Bornhäuser M, Ehninger G, Rieber EP, Bachmann M Simultaneous engagement of the activatory receptors NKG2D and CD3 for retargeting of effector cells to CD33-positive malignant cells. Leukemia. 2011 Jun;25(6):1053–6	Leukemia	2011
Krastev DB, Slabicki M, Paszkowski-Rogacz M, Hubner NC, Junqueira M, Shevchenko A, Mann M, Neugebauer KM, Buchholz F A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly. Nat Cell Biol. 2011 Jun 5;13(7):809–18	Nat Cell Biol	2011
Oesterreich FC, Bieberstein N, Neugebauer KM Pause locally, splice globally. Trends Cell Biol. 2011 Jun;21(6):328–35	Trends Cell Biol	2011
Chopin M, Chacón-Martínez CA, Jessberger R Fine tuning of IRF-4 expression by SWAP-70 controls the initiation of plasma cell development. Eur J Immunol. 2011 Jul 4	Eur J Immunol	2011
Zieris A, Chwalek K, Prokoph S, Levental KR, Welzel PB, Freudenberg U, Werner C Dual independent delivery of pro-angiogenic growth factors from starPEG-heparin hydrogels. J Control Release. 2011 Jul 6	J Control Release	2011
Mende S, Royer L, Herr A, Schmiedel J, Deschauer M, Klopstock T, Kostic VS, Schroeder M, Reichmann H, Storch A Whole blood genome-wide expression profiling and network analysis suggest MELAS master regulators. Neurol Res. 2011 Jul;33(6):638–55	Neurol Res	2011
Begasse ML, Hyman AA The First Cell Cycle of the Caenorhabditis elegans Embryo: Spatial and Temporal Control of an Asymmetric Cell Division. Results Probl Cell Differ. 2011;53:109–33	Results Probl Cell Differ	2011
Decker M, Jaensch S, Pozniakovsky A, Zinke A, O'Connell KF, Zachariae W, Myers E, Hyman AA Limiting amounts of centrosome material set centrosome size in C. elegans embryos. Curr Biol. 2011 Aug 9;21(15):1259–67	Curr Biol	2011
Erkut C, Penkov S, Khesbak H, Vorkel D, Verbavatz JM, Fahmy K, Kurzchalia TV Trehalose renders the dauer larva of Caenorhabditis elegans resistant to extreme desiccation. Curr Biol. 2011 Aug 9;21(15):1331–6	Curr Biol	2011
Bormuth V, Zörgibel F, Schäffer E, Howard J Functional surface attachment in a sandwich geometry of GFP-labeled motor proteins. Methods Mol Biol. 2011;778:11–8	Methods Mol Biol	2011
Sedzinski J, Biro M, Oswald A, Tinevez JY, Salbreux G, Paluch E, Polar actomyosin contractility destabilizes the position of the cytokinetic furrow. Nature. 2011 Aug 7;476(7361):462–6	Nature	2011
Weber M, Huisken J Light sheet microscopy for real-time developmental biology. Curr Opin Genet Dev. 2011 Oct;21(5):566–72	Curr Opin Genet Dev	2011
Korten T, Nitzsche B, Gell C, Ruhnow F, Leduc C, Diez S Fluorescence imaging of single Kinesin motors on immobilized microtubules. Methods Mol Biol. 2011;783:121–37	Methods Mol Biol	2011
Krastev DB, Buchholz F Ribosome biogenesis and p53: Who is regulating whom? Cell Cycle. 2011 Oct 15;10(20):3417–8	Cell Cycle	2011
Soroldoni D, Oates AC Live transgenic reporters of the vertebrate embryo's Segmentation Clock. Curr Opin Genet Dev. 2011 Oct;21(5):600–5	Curr Opin Genet Dev	2011
Chopin M, Chacón-Martínez CA, Jessberger R Fine tuning of IRF-4 expression by SWAP-70 controls the initiation of plasma cell development. Eur J Immunol. 2011 Oct;41(10):3063–74	Eur J Immunol	2011
Ettinger AW, Wilsch-Bräuninger M, Marzesco AM, Bickle M, Lohmann A, Maliga Z, Karbanová J, Corbeil D, Hyman AA, Huttner WB Proliferating versus differentiating stem and cancer cells exhibit distinct midbody-release behaviour. Nat Commun. 2011 Oct 18;2:503	Nat Commun	2011
Kaiser HJ, Orłowski A, Róg T, Nyholm TK, Chai W, Feizi T, Lingwood D, Vattulainen I, Simons K Lateral sorting in model membranes by cholesterol-mediated hydrophobic matching. Proc Natl Acad Sci U S A. 2011 Oct 4;108(40):16628–33	Proc Natl Acad Sci	2011
Sezgin E, Schwille P Fluorescence Techniques to Study Lipid Dynamics. Cold Spring Harb Perspect Biol. 2011 Jun 13	CSH Perspect Biol	2011
Nacu E, Tanaka EM Limb regeneration: a new development? Annu Rev Cell Dev Biol. 2011 Nov 10;27:409–40	Annu Rev Cell Dev Bi	2011
Kroehne V, Freudenreich D, Hans S, Kaslin J, Brand M Regeneration of the adult zebrafish brain from neurogenic radial glia-type progenitors. Development. 2011 Nov;138(22):4831–41	Development	2011
Muschalik N, Knust E Increased levels of the cytoplasmic domain of Crumbs repolarise developing Drosophila photoreceptors. J Cell Sci. 2011 Nov 1;124(Pt 21):3715–25	J Cell Sci	2011
Kaiser HJ, Surma MA, Mayer F, Levental I, Grzybek M, Klemm RW, Da Cruz S, Meisinger C, Müller V, Simons K, Lingwood D Molecular convergence of bacterial and eukaryotic surface order. J Biol Chem. 2011 Nov 25;286(47):40631–7	J Biol Chem	2011
Kagermeier-Schenk B, Wehner D, Ozhan-Kizil G, Yamamoto H, Li J, Kirchner K, Hoffmann C, Stern P, Kikuchi A, Schambony A, Weidinger G Waif1/5T4 Inhibits Wnt/β-Catenin Signaling and Activates Noncanonical Wnt Pathways by Modifying LRP6 Subcellular Localization. Dev Cell. 2011 Nov 17.	Dev Cell	2011
Korten T, Birnbaum W, Kuckling D, Diez S Selective control of gliding microtubule populations. Nano Lett. 2012 Jan 11;12(1):348–53. Epub 2011 Dec 12	Nano Lett	2011
Planas-Paz L, Strilić B, Goedecke A, Breier G, Fässler R, Lammert E Mechanoinduction of lymph vessel expansion. EMBO J. 2011 Dec 13;31(4):788–804	EMBO J	2011
Surma MA, Klose C, Simons K Lipid-dependent protein sorting at the trans-Golgi network. Biochim Biophys Acta. 2011 Dec 31	Biochim Biophys Acta	2011
Kedrov A, Hellawell AM, Klosin A, Broadhurst RB, Kunji ER, Müller DJ Probing the interactions of carboxy-atractyloside and atractyloside with the yeast mitochondrial ADP/ATP carrier. Structure. 2010 Jan 13;18(1):39–46	Structure	2010
Nemtsas P, Wettwer E, Christ T, Weidinger G, Ravens U Adult zebrafish heart as a model for human heart? An electrophysiological study. J Mol Cell Cardiol. 2010 Jan;48(1):161–71	J Mol Cell Cardiol	2010
Marsico A, Scheubert K, Tuukkanen A, Henschel A, Winter C, Winnenburg R, Schroeder M MeMotif: a database of linear motifs in alpha-helical transmembrane proteins. Nucleic Acids Res. 2010 Jan;38(Database issue):D181–9	Nucleic Acids Res	2010
Strzelecka M, Oates AC, Neugebauer KM Dynamic control of Cajal body number during zebrafish embryogenesis. Nucleus. 2010 Jan;1(1):96–108	Nucleus (Austin)	2010
Pan-Montojo F, Anichtchik O, Dening Y, Knels L, Pursche S, Jung R, Jackson S, Gille G, Spillantini MG, Reichmann H, Funk RH Progression of Parkinson's disease pathology is reproduced by intragastric administration of rotenone in mice. PLoS One. 2010 Jan 19;5(1):e8762	PLoS One	2010
Lingwood D, Simons K Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46–50. Review	Science	2010
Attardo A, Fabel K, Krebs J, Haubensak W, Huttner WB, Kempermann G Tis21 expression marks not only populations of neurogenic precursor cells but also new postmitotic neurons in adult hippocampal neurogenesis. Cereb Cortex. 2010 Feb;20(2):304–14. Epub 2009 May 29	Cereb Cortex	2010
Greenan G, Brangwynne CP, Jaensch S, Gharakhani J, Jülicher F, Hyman AA Centrosome size sets mitotic spindle length in Caenorhabditis elegans embryos. Curr Biol. 2010 Feb 23;20(4):353–8	Curr Biol	2010
Meyer AK, Maisel M, Hermann A, Stirl K, Storch A Restorative approaches in Parkinson's Disease: which cell type wins the race? J Neurol Sci. 2010 Feb 15;289(1–2):93–103. Review	J Neurol Sci	2010
Collinet C, Stöter M, Bradshaw CR, Samusik N, Rink JC, Kenski D, Habermann B, Buchholz F, Henschel R, Mueller MS, Nagel WE, Fava E, Kalaidzidis Y, Zerial M Systems survey of endocytosis by multiparametric image analysis. Nature. 2010 Mar 11;464(7286):243–9	Nature	2010
Marsico A, Henschel A, Winter C, Tuukkanen A, Vassilev B, Scheubert K, Schroeder M Structural fragment clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins. BMC Bioinformatics. 2010 Apr 26;11:204	BMC Bioinformatics	2010
Kalinina IM, Krstić V, Tolić-Nørrelykke IM Cell polarity: which way to grow in an electric field? Curr Biol. 2010 Apr 27;20(8):R355–6	Curr Biol	2010
Damaghi M, Bippes C, Köster S, Yildiz O, Mari SA, Kühlbrandt W, Muller DJ pH-dependent interactions guide the folding and gate the transmembrane pore of the beta-barrel membrane protein OmpG. J Mol Biol. 2010 Apr 9;397(4):878–82	J Mol Biol	2010
Berndt M, Lorenz M, Enderlein J, Diez S Axial nanometer distances measured by fluorescence lifetime imaging microscopy. Nano Lett. 2010 Apr 14;10(4):1497–500	Nano Lett	2010
Bechstedt S, Albert JT, Kreil DP, Müller-Reichert T, Göpfert MC, Howard J A doublecortin containing microtubule-associated protein is implicated in mechanotransduction in Drosophila sensory cilia. Nat Commun. 2010 Apr 12;1:11.G390	Nat Commun	2010
Strzelecka M, Trowitzsch S, Weber G, Lührmann R, Oates AC, Neugebauer KM Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis. Nat Struct Mol Biol. 2010 Apr;17(4):403–9	Nat Struct Mol Biol	2010
Paszkowski-Rogacz M, Slabicki M, Pisabarro MT, Buchholz F PhenoFam-gene set enrichment analysis through protein structural information. BMC Bioinformatics. 2010 May 17;11:254	BMC Bioinformatics	2010
Jaensch S, Decker M, Hyman AA, Myers EW Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos. Bioinformatics. 2010 Jun 15;26(12):i13–20	Bioinformatics	2010
Saalfeld S, Cardona A, Hartenstein V, Tomancák P As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. Bioinformatics. 2010 Jun 15;26(12):i57–63	Bioinformatics	2010
Preibisch S, Saalfeld S, Schindelin J, Tomancak P Software for bead-based registration of selective plane illumination microscopy data. Nat Methods. 2010 Jun;7(6):418–9	Nat Methods	2010
Fietz SA, Kelava I, Vogt J, Wilsch-Bräuninger M, Stenzel D, Fish JL, Corbeil D, Riehn A, Distler W, Nitsch R, Huttner WB OSVZ progenitors of human and ferret neocortex are epithelial-like and expand by integrin signaling. Nat Neurosci. 2010 Jun;13(6):690–9	Nat Neurosci	2010
Słabicki M, Theis M, Krastev DB, Samsonov S, Mundwiller E, Junqueira M, Paszkowski-Rogacz M, Teyra J, Heninger AK, Poser I, Prieur F, Truchetto J, Confavreux C, Marelli C, Durr A, Camdessanche JP, Brice A, Shevchenko A, Pisabarro MT, Stevanin G, Buchholz F A genome-scale DNA repair RNAi screen identifies SPG48 as a novel gene associated with hereditary spastic paraplegia. PLoS Biol. 2010 Jun 29;8(6):e1000408	PLoS Biol	2010
Maresca M, Erler A, Fu J, Friedrich A, Zhang Y, Stewart AF Single-stranded heteroduplex intermediates in lambda Red homologous recombination. BMC Mol Biol. 2010 Jul 29;11:54	BMC Mol Biol	2010
Herrgen L, Ares S, Morelli LG, Schröter C, Jülicher F, Oates AC Intercellular coupling regulates the period of the segmentation clock. Curr Biol. 2010 Jul 27;20(14):1244–53	Curr Biol	2010
Schröter C, Oates AC Segment number and axial identity in a segmentation clock period mutant. Curr Biol. 2010 Jul 27;20(14):1254–8	Curr Biol	2010
Nitzsche B, Bormuth V, Bräuer C, Howard J, Ionov L, Kerssemakers J, Korten T, Leduc C, Ruhnow F, Diez S Studying kinesin motors by optical 3D-nanometry in gliding motility assays. Methods Cell Biol. 2010;95:247–71	Methods Cell Biol	2010
Pabis M, Neufeld N, Shav-Tal Y, Neugebauer KM Binding properties and dynamic localization of an alternative isoform of the cap-binding complex subunit CBP20. Nucleus. 2010 Jul;1(5):412–421	Nucleus	2010
Zagoriy V, Matyash V, Kurzchalia T Long-chain O-ascarosyl-alkanediols are constitutive components of Caenorhabditis elegans but do not induce dauer larva formation. Chem Biodivers. 2010 Aug;7(8):2016–22	Chem Biodivers	2010
Korten T, Månsson A, Diez S Towards the application of cytoskeletal motor proteins in molecular detection and diagnostic devices. Curr Opin Biotechnol. 2010 Aug;21(4):477–88	Curr Opin Biotechnol	2010
Kupinski AP, Müller-Reichert T, Eckmann CR The Caenorhabditis elegans Ste20 kinase, GCK-3, is essential for postembryonic developmental timing and regulates meiotic chromosome segregation. Dev Biol. 2010 Aug 15;344(2):758–71	Dev Biol	2010
Gloor Y, Schöne M, Habermann B, Ercan E, Beck M, Weselek G, Müller-Reichert T, Walch-Solimena C Interaction between Sec7p and Pik1p: the first clue for the regulation of a coincidence detection signal. Eur J Cell Biol. 2010 Aug;89(8):575–83	Eur J Cell Biol	2010
Ganz J, Kaslin J, Hochmann S, Freudenreich D, Brand M Heterogeneity and Fgf dependence of adult neural progenitors in the zebrafish telencephalon. Glia. 2010 Aug 15;58(11):1345–63	Glia	2010
Redemann S, Pecreaux J, Goehring NW, Khairy K, Stelzer EH, Hyman AA, Howard J Membrane invaginations reveal cortical sites that pull on mitotic spindles in one-cell C. elegans embryos. PLoS One. 2010 Aug 20;5(8):e12301	PLoS One	2010
Schubert S, Knoch KP, Ouwendijk J, Mohammed S, Bodrov Y, Jäger M, Altkrüger A, Wegbrod C, Adams ME, Kim Y, Froehner SC, Jensen ON, Kalaidzidis Y, Solimena M β2-Syntrophin is a Cdk5 substrate that restrains the motility of insulin secretory granules. PLoS One. 2010 Sep 23;5(9):e12929	PLoS One	2010
Arunachalam M, Jayasurya K, Tomancak P, Ohler U An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes. Bioinformatics. 2010 Sep 1;26(17):2109–15	Bioinformatics	2010
Klose C, Ejsing CS, García-Sáez AJ, Kaiser HJ, Sampaio JL, Surma MA, Shevchenko A, Schwille P, Simons K Yeast lipids can phase-separate into micrometer-scale membrane domains. J Biol Chem. 2010 Sep 24;285(39):30224–32	J Biol Chem	2010
Mayer M, Depken M, Bois JS, Jülicher F, Grill SW Anisotropies in cortical tension reveal the physical basis of polarizing cortical flows. Nature. 2010 Sep 30;467(7315):617–21	Nature	2010
Pulvers JN, Bryk J, Fish JL, Wilsch-Bräuninger M, Arai Y, Schreier D, Naumann R, Helppi J, Habermann B, Vogt J, Nitsch R, Tóth A, Enard W, Pääbo S, Huttner WB Mutations in mouse Aspm (abnormal spindle-like microcephaly associated) cause not only microcephaly but also major defects in the germline. Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16595–600	Proc Natl Acad Sci	2010
Straube WL, Tanaka EM Reversibility of the differentiated state: regeneration in amphibians. Artif Organs. 2006 Oct;30(10):743–55. Review	Artif Organs	2010
Strilić B, Kucera T, Lammert E Formation of cardiovascular tubes in invertebrates and vertebrates. Cell Mol Life Sci. 2010 Oct;67(19):3209–18. Review	Cell Mol Life Sci	2010
Strilić B, Kucera T, Eglinger J, Hughes MR, McNagny KM, Tsukita S, Dejana E, Ferrara N, Lammert E The molecular basis of vascular lumen formation in the developing mouse aorta. Dev Cell. 2009 Oct;17(4):505–15	Dev Cell	2010
Chopin M, Quemeneur L, Ripich T, Jessberger R SWAP-70 controls formation of the splenic marginal zone through regulating T1B-cell differentiation. Eur J Immunol. 2010 Oct 5	Eur J Immunol	2010
Fonseca AV, Freund D, Bornhäuser M, Corbeil D Polarization and migration of hematopoietic stem and progenitor cells rely on the RhoA/ROCK I pathway and an active reorganization of the microtubule network. J Biol Chem. 2010 Oct 8;285(41):31661–71	J Biol Chem	2010
Pan-Montojo FJ, Funk RH Oral administration of rotenone using a gavage and image analysis of alpha-synuclein inclusions in the enteric nervous system. J Vis Exp. 2010 Oct 26;(44). pii: 2123	J Vis Exp	2010
Carvalho L, Heisenberg CP The yolk syncytial layer in early zebrafish development. Trends Cell Biol. 2010 Oct;20(10):586–92. Review	Trends Cell Biol	2010
Suckale J, Solimena M The insulin secretory granule as a signaling hub. Trends Endocrinol Metab. 2010 Oct;21(10):599–609. Review	Trends Endocrinol Metab	2010
Quesada-Hernández E, Caneparo L, Schneider S, Winkler S, Liebling M, Fraser SE, Heisenberg CP Stereotypical cell division orientation controls neural rod midline formation in zebrafish. Curr Biol. 2010 Nov 9;20(21):1966–72	Curr Biol	2010
Strilić B, Eglinger J, Krieg M, Zeeb M, Axnick J, Babál P, Müller DJ, Lammert E Electrostatic cell-surface repulsion initiates lumen formation in developing blood vessels. Curr Biol. 2010 Nov 23;20(22):2003–9	Curr Biol	2010
Carvalho M, Schwudke D, Sampaio JL, Palm W, Riezman I, Dey G, Gupta GD, Mayor S, Riezman H, Shevchenko A, Kurzchalia TV, Eaton S Survival strategies of a sterol auxotroph. Development. 2010 Nov;137(21):3675–85	Development	2010
Carrillo Oesterreich F, Preibisch S, Neugebauer KM Global analysis of nascent RNA reveals transcriptional pausing in terminal exons. Mol Cell. 2010 Nov 24;40(4):571–81	Mol Cell	2010
Diz-Muñoz A, Krieg M, Bergert M, Ibarlucea-Benitez I, Muller DJ, Paluch E, Heisenberg CP Control of directed cell migration in vivo by membrane-to-cortex attachment. PLoS Biol. 2010 Nov 30;8(11):e1000544	PLoS Biol	2010
Penkov S, Mende F, Zagoriy V, Erkut C, Martin R, Pässler U, Schuhmann K, Schwudke D, Gruner M, Mäntler J, Reichert-Müller T, Shevchenko A, Knölker HJ, Kurzchalia TV Maradolipids: diacyltrehalose glycolipids specific to dauer larva in Caenorhabditis elegans. Angew Chem Int Ed Engl. 2010 Dec 3;49(49):9430–5	Angew Chem Int Ed	2010
Kawamura S, Colozo AT, Müller DJ, Park PS Conservation of molecular interactions stabilizing bovine and mouse rhodopsin. Biochemistry. 2010 Dec 14;49(49):10412–20	Biochemistry-US	2010
Damaghi M, Sapra KT, Köster S, Yildiz Ö, Kühlbrandt W, Muller DJ Dual energy landscape: the functional state of the β-barrel outer membrane protein G molds its unfolding energy landscape. Proteomics. 2010 Dec;10(23):4151–62	Proteomics	2010
Tuukkanen A, Huang B, Henschel A, Stewart F, Schroeder M Structural modeling of histone methyltransferase complex Set1C from Saccharomyces cerevisiae using constraint-based docking. Proteomics. 2010 Dec;10(23):4186–95	Proteomics	2010
Fierro FA, Brenner S, Oelschlaegel U, Jacobi A, Knoth H, Ehninger G, Illmer T, Bornhäuser M Combining SDF-1/CXCR4 antagonism and chemotherapy in relapsed acute myeloid leukemia. Leukemia. 2009 Feb;23(2):393–6	Leukemia	2009
Ejsing CS, Sampaio JL, Surendranath V, Duchoslav E, Ekroos K, Klemm RW, Simons K, Shevchenko A Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry. Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2136–41	Proc Natl Acad Sci	2009
Heckel T, Czupalla C, Expirto Santo AI, Anitei M, Sanchez-Fernandez MA, Mosch K, Krause E, Hoflack B Src-dependent repression of ARF6 is required to maintain podosome-rich sealing zones in bone-digesting osteoclasts. Proc Natl Acad Sci U S A. 2009 Feb 3;106(5):1451–6	Proc Natl Acad Sci	2009
Kanczkowski W, Zacharowski K, Wirth MP, Ehrhart-Bornstein M, Bornstein SR Differential expression and action of Toll-like receptors in human adrenocortical cells. Mol Cell Endocrinol. 2009 Mar 5;300(1–2):57–65	Mol Cell Endocrinol	2009
Süss C, Czupalla C, Winter C, Pursche T, Knoch KP, Schroeder M, Hoflack B, Solimena M Rapid changes of mRNA-binding protein levels following glucose and 3-isobutyl-1-methylxanthine stimulation of insulinoma INS-1 cells. Mol Cell Proteomics. 2009 Mar;8(3):393–408	Mol Cell Proteomics	2009
Carvalho L, Stühmer J, Bois JS, Kalaidzidis Y, Lecaudey V, Heisenberg CP Control of convergent yolk syncytial layer nuclear movement in zebrafish. Development. 2009 Apr;136(8):1305–15	Development	2009
Glaser S, Lubitz S, Loveland KL, Ohbo K, Robb L, Schwenk F, Seibler J, Roellig D, Kranz A, Anastassiadis K, Stewart AF The histone 3 lysine 4 methyltransferase, Mll2, is only required briefly in development and spermatogenesis. Epigenetics Chromatin. 2009 Apr 6;2(1):5	Epigenet Chromatin	2009
Schmid M, Küchler B, Eckmann CR Two conserved regulatory cytoplasmic poly(A) polymerases, GLD-4 and GLD-2, regulate meiotic progression in C. elegans. Genes Dev. 2009 Apr 1;23(7):824–36	Genes Dev	2009
Vogel SK, Pavin N, Maghelli N, Jülicher F, Tolić-Nørrelykke IM Self-organization of dynein motors generates meiotic nuclear oscillations. PLoS Biol. 2009 Apr 21;7(4):e1000087	PLoS Biol	2009
Kucera T, Strilić B, Regener K, Schubert M, Laudet V, Lammert E Ancestral vascular lumen formation via basal cell surfaces. PLoS One. 2009;4(1):e4132	PLoS One	2009
Demontis F, Dahmann C Characterization of the Drosophila ortholog of the human Usher Syndrome type 1G protein sans. PLoS One. 2009;4(3):e4753. Epub 2009 Mar 9	PLoS One	2009
Lingwood D, Schuck S, Ferguson C, Gerl MJ, Simons K Generation of cubic membranes by controlled homotypic interaction of membrane proteins in the endoplasmic reticulum. J Biol Chem. 2009 May 1;284(18):12041–8	J Biol Chem	2009
Klemm RW, Ejsing CS, Surma MA, Kaiser HJ, Gerl MJ, Sampaio JL, de Robillard Q, Ferguson C, Proszynski TJ, Shevchenko A, Simons K Segregation of sphingolipids and sterols during formation of secretory vesicles at the trans-Golgi network. J Cell Biol. 2009 May 18;185(4):601–12	J Cell Biol	2009
Widmann TJ, Dahmann C Dpp signaling promotes the cuboidal-to-columnar shape transition of Drosophila wing disc epithelia by regulating Rho1. J Cell Sci. 2009 May 1;122(Pt 9):1362–73	J Cell Sci	2009
Kalvodova L, Sampaio JL, Cordo S, Ejsing CS, Shevchenko A, Simons K The lipidomes of vesicular stomatitis virus, semliki forest virus, and the host plasma membrane analyzed by quantitative shotgun mass spectrometry. J Virol. 2009 Aug;83(16):7996–8003	J Virol	2009
Benenati G, Penkov S, Müller-Reichert T, Entchev EV, Kurzchalia TV Two cytochrome P450s in Caenorhabditis elegans are essential for the organization of eggshell, correct execution of meiosis and the polarization of embryo. Mech Dev. 2009 May-Jun;126(5–6):382–93	Mech Develop	2009
Rybarska A, Harterink M, Jedamzik B, Kupinski AP, Schmid M, Eckmann CR GLS-1, a novel P granule component, modulates a network of conserved RNA regulators to influence germ cell fate decisions. PLoS Genet. 2009 May;5(5):e1000494	PLoS Genet	2009
Preibisch S, Saalfeld S, Tomancak P Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinformatics. 2009 Jun 1;25(11):1463–5	Bioinformatics	2009
Hannich JT, Entchev EV, Mende F, Boytchev H, Martin R, Zagoriy V, Theumer G, Riezman I, Riezman H, Knölker HJ, Kurzchalia TV Methylation of the sterol nucleus by STRM-1 regulates dauer larva formation in Caenorhabditis elegans. Dev Cell. 2009 Jun;16(6):833–43	Dev Cell	2009
Pulvers JN, Huttner WB Brca1 is required for embryonic development of the mouse cerebral cortex to normal size by preventing apoptosis of early neural progenitors. Development. 2009 Jun;136(11):1859–68	Development	2009
Fink G, Hajdo L, Skowronek KJ, Reuther C, Kasprzak AA, Diez S The mitotic kinesin-14 Ncd drives directional microtubule-microtubule sliding. Nat Cell Biol. 2009 Jun;11(6):717–23	Nat Cell Biol	2009
Ejsmont RK, Sarov M, Winkler S, Lipinski KA, Tomancak P A toolkit for high-throughput, cross-species gene engineering in Drosophila. Nat Methods. 2009 Jun;6(6):435–7	Nat Methods	2009
Fei JF, Huttner WB Nonselective sister chromatid segregation in mouse embryonic neocortical precursor cells. Cereb Cortex. 2009 Jul;19 Suppl 1:i49–54	Cereb Cortex	2009
Ugarte F, Ryser M, Thieme S, Fierro FA, Navratiel K, Bornhäuser M, Brenner S Notch signaling enhances osteogenic differentiation while inhibiting adipogenesis in primary human bone marrow stromal cells. Exp Hematol. 2009 Jul;37(7):867–875.e1	Exp Hematol	2009
Carvalho L, Heisenberg CP Imaging zebrafish embryos by two-photon excitation time-lapse microscopy. Methods Mol Biol. 2009;546:273–87	Methods Mol Biol	2009
Herrgen L, Schröter C, Bajard L, Oates AC Multiple embryo time-lapse imaging of zebrafish development. Methods Mol Biol. 2009;546:243–54	Methods Mol Biol	2009
Soroldoni D, Hogan BM, Oates AC Simple and efficient transgenesis with meganuclease constructs in zebrafish. Methods Mol Biol. 2009;546:117–30	Methods Mol Biol	2009
Kragl M, Knapp D, Nacu E, Khattak S, Maden M, Epperlein HH, Tanaka EM Cells keep a memory of their tissue origin during axolotl limb regeneration. Nature. 2009 Jul 2;460(7251):60–5	Nature	2009
Kittler R, Pelletier L, Buchholz F Systems biology of mammalian cell division. Cell Cycle. 2008 Jul 15;7(14):2123–8. Epub 2008 May 21. Review	Cell Cycle	2009
Saalfeld S, Cardona A, Hartenstein V, Tomancák P CATMAID: collaborative annotation toolkit for massive amounts of image data. Bioinformatics. 2009 Aug 1;25(15):1984–6	Bioinformatics	2009
Winnenburg R, Plake C, Schroeder M Improved mutation tagging with gene identifiers applied to membrane protein stability prediction. BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S3	BMC Bioinformatics	2009
Kragl M, Tanaka EM Axolotl (Ambystoma mexicanum) limb and tail amputation. Cold Spring Harb Protoc. 2009 Aug;2009(8):pdb.prot5267	Cold Spring Harb Protoc	2009
Kragl M, Tanaka EM Grafting axolotl (Ambystoma mexicanum) limb skin and cartilage from GFP+ donors to normal hosts. Cold Spring Harb Protoc. 2009 Aug;2009(8):pdb.prot5266	Cold Spring Harb Protoc	2009
Nacu E, Knapp D, Tanaka EM, Epperlein HH Axolotl (Ambystoma mexicanum) embryonic transplantation methods. Cold Spring Harb Protoc. 2009 Aug;2009(8):pdb.prot5265	Cold Spring Harb Protoc	2009
Erler A, Wegmann S, Elie-Caille C, Bradshaw CR, Maresca M, Seidel R, Habermann B, Muller DJ, Stewart AF Conformational adaptability of Redbeta during DNA annealing and implications for its structural relationship with Rad52. J Mol Biol. 2009 Aug 21;391(3):586–98	J Mol Biol	2009
Bormuth V, Varga V, Howard J, Schäffer E Protein friction limits diffusive and directed movements of kinesin motors on microtubules. Science. 2009 Aug 14;325(5942):870–3	Science	2009
Sabolek M, Baumann B, Heinrich M, Meyer AK, Herborg A, Liebau S, Maisel M, Hermann A, Ventz K, Schwarz J, Wirth T, Storch A Initiation of dopaminergic differentiation of Nurr1(-) mesencephalic precursor cells depends on activation of multiple mitogen-activated protein kinase pathways. Stem Cells. 2009 Aug;27(8):2009–21	Stem Cells	2009
Varga V, Leduc C, Bormuth V, Diez S, Howard J Kinesin-8 motors act cooperatively to mediate length-dependent microtubule depolymerization. Cell. 2009 Sep 18;138(6):1174–83	Cell	2009
Yu SR, Burkhardt M, Nowak M, Ries J, Petrásek Z, Scholpp S, Schwille P, Brand M Fgf8 morphogen gradient forms by a source-sink mechanism with freely diffusing molecules. Nature. 2009 Sep 24;461(7263):533–6	Nature	2009
Kaiser HJ, Lingwood D, Levental I, Sampaio JL, Kalvodova L, Rajendran L, Simons K Order of lipid phases in model and plasma membranes. Proc Natl Acad Sci U S A. 2009 Sep 29;106(39):16645–50	Proc Natl Acad Sci	2009
Schenk J, Wilsch-Bräuninger M, Calegari F, Huttner WB Myosin II is required for interkinetic nuclear migration of neural progenitors. Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16487–92	Proc Natl Acad Sci	2009
Lingwood D, Schuck S, Ferguson C, Gerl M, Simons K Morphological homeostasis by autophagy. Autophagy. 2009 Oct;5(7):1039–40	Autophagy	2009
Lingwood D, Kaiser HJ, Levental I, Simons K Lipid rafts as functional heterogeneity in cell membranes. Biochem Soc Trans. 2009 Oct;37(Pt 5):955–60	Biochem Soc Trans	2009
Jedamzik B, Eckmann CR Analysis of RNA-protein complexes by RNA coimmunoprecipitation and RT-PCR analysis from Caenorhabditis elegans. Cold Spring Harb Protoc. 2009 Oct;2009(10):pdb.prot5300	Cold Spring Harb Protoc	2009
Jedamzik B, Eckmann CR Analysis of in vivo protein complexes by coimmunoprecipitation from Caenorhabditis elegans. Cold Spring Harb Protoc. 2009 Oct;2009(10):pdb.prot5299	Cold Spring Harb Protoc	2009
Widmann TJ, Dahmann C Wingless signaling and the control of cell shape in Drosophila wing imaginal discs. Dev Biol. 2009 Oct 1;334(1):161–73	Dev Biol	2009
Loose M, Schwille P Biomimetic membrane systems to study cellular organization. J Struct Biol. 2009 Oct;168(1):143–51	J Struct Biol	2009
Chung KF, Sicard F, Vukicevic V, Hermann A, Storch A, Huttner WB, Bornstein SR, Ehrhart-Bornstein M Isolation of neural crest derived chromaffin progenitors from adult adrenal medulla. Stem Cells. 2009 Oct;27(10):2602–13	Stem Cells	2009
Keller H, Lorizate M, Schwille P PI(4,5)P2 degradation promotes the formation of cytoskeleton-free model membrane systems. Chemphyschem. 2009 Nov 9;10(16):2805–12	Chemphyschem	2009
Yesil P, Michel M, Chwalek K, Pedack S, Jany C, Ludwig B, Bornstein SR, Lammert E A new collagenase blend increases the number of islets isolated from mouse pancreas. Islets. 2009 Nov-Dec;1(3):185–90	Islets	2009
Spandl J, White DJ, Peychl J, Thiele C Live cell multicolor imaging of lipid droplets with a new dye, LD540. Traffic. 2009 Nov;10(11):1579–84	Traffic	2009
Landsberg KP, Farhadifar R, Ranft J, Umetsu D, Widmann TJ, Bittig T, Said A, Jülicher F, Dahmann C Increased cell bond tension governs cell sorting at the Drosophila anteroposterior compartment boundary. Curr Biol. 2009 Dec 1;19(22):1950–5	Curr Biol	2009
Khaliullina H, Panáková D, Eugster C, Riedel F, Carvalho M, Eaton S Patched regulates Smoothened trafficking using lipoprotein-derived lipids. Development. 2009 Dec;136(24):4111–21	Development	2009
Kamal MM, Mills D, Grzybek M, Howard J Measurement of the membrane curvature preference of phospholipids reveals only weak coupling between lipid shape and leaflet curvature. Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22245–50	Proc Natl Acad Sci	2009
Koch S, Jacobi A, Ryser M, Ehninger G, Thiede C Abnormal localization and accumulation of FLT3-ITD, a mutant receptor tyrosine kinase involved in leukemogenesis. Cells Tissues Organs. 2008;188(1–2):225–35	Cells Tissues Organs	2008
Schötz EM, Burdine RD, Jülicher F, Steinberg MS, Heisenberg CP, Foty RA Quantitative differences in tissue surface tension influence zebrafish germ layer positioning. HFSP J. 2008 Feb;2(1):42–56	HFSP J	2008
Klyszejko AL, Shastri S, Mari SA, Grubmüller H, Muller DJ, Glaubitz C Folding and assembly of proteorhodopsin. J Mol Biol. 2008 Feb 8;376(1):35–41	J Mol Biol	2008
Schröter C, Herrgen L, Cardona A, Brouhard GJ, Feldman B, Oates AC Dynamics of zebrafish somitogenesis. Dev Dyn. 2008 Mar;237(3):545–53	Dev Dynam	2008
Demmel L, Beck M, Klose C, Schlaitz AL, Gloor Y, Hsu PP, Havlis J, Shevchenko A, Krause E, Kalaidzidis Y, Walch-Solimena C Nucleocytoplasmic shuttling of the Golgi phosphatidylinositol 4-kinase Pik1 is regulated by 14–3-3 proteins and coordinates Golgi function with cell growth. Mol Biol Cell. 2008 Mar;19(3):1046–61	Mol Biol Cell	2008
Kuerschner L, Moessinger C, Thiele C Imaging of lipid biosynthesis: how a neutral lipid enters lipid droplets. Traffic. 2008 Mar;9(3):338–52	Traffic	2008
Buffa L, Fuchs E, Pietropaolo M, Barr F, Solimena M ICA69 is a novel Rab2 effector regulating ER-Golgi trafficking in insulinoma cells. Eur J Cell Biol. 2008 Apr;87(4):197–209	Eur J Cell Biol	2008
Fierro FA, Taubenberger A, Puech PH, Ehninger G, Bornhauser M, Muller DJ, Illmer T BCR/ABL expression of myeloid progenitors increases beta1-integrin mediated adhesion to stromal cells. J Mol Biol. 2008 Apr 4;377(4):1082–93. PMID: 18313694 [PubMed – indexed for MEDLINE]	J Mol Biol	2008
Suckale J, Solimena M Pancreas islets in metabolic signaling--focus on the beta-cell. Front Biosci. 2008 May 1;13:7156–71. Review	Front Biosci-Landmrk	2008
Demmel L, Gravert M, Ercan E, Habermann B, Müller-Reichert T, Kukhtina V, Haucke V, Baust T, Sohrmann M, Kalaidzidis Y, Klose C, Beck M, Peter M, Walch-Solimena C The clathrin adaptor Gga2p is a phosphatidylinositol 4-phosphate effector at the Golgi exit. Mol Biol Cell. 2008 May;19(5):1991–2002	Mol Biol Cell	2008
Loose M, Fischer-Friedrich E, Ries J, Kruse K, Schwille P Spatial regulators for bacterial cell division self-organize into surface waves in vitro. Science. 2008 May 9;320(5877):789–92	Science	2008
Sapra KT, Damaghi M, Köster S, Yildiz O, Kühlbrandt W, Muller DJ One beta hairpin after the other: exploring mechanical unfolding pathways of the transmembrane beta-barrel protein OmpG. Angew Chem Int Ed Engl. 2009;48(44):8306–8	Angew Chem Int Ed	2008
Ohrt T, Schwille P siRNA modifications and sub-cellular localization: a question of intracellular transport? Curr Pharm Des. 2008;14(34):3674–85. Review	Curr Pharm Design	2008
Kanczkowski W, Ziegler CG, Zacharowski K, Bornstein SR Toll-like receptors in endocrine disease and diabetes. Neuroimmunomodulation. 2008;15(1):54–60	Neuroimmunomodulation	2008
Lingwood D, Ries J, Schwille P, Simons K Plasma membranes are poised for activation of raft phase coalescence at physiological temperature. Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10005–10	Proc Natl Acad Sci	2008
Junqueira M, Spirin V, Santana Balbuena T, Waridel P, Surendranath V, Kryukov G, Adzhubei I, Thomas H, Sunyaev S, Shevchenko A Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification. J Proteome Res. 2008 Aug;7(8):3382–95	J Proteome Res	2008
Junqueira M, Spirin V, Balbuena TS, Thomas H, Adzhubei I, Sunyaev S, Shevchenko A Protein identification pipeline for the homology-driven proteomics. J Proteomics. 2008 Aug 21;71(3):346–56	J Proteomics	2008
Cisneros DA, Oberbarnscheidt L, Pannier A, Klare JP, Helenius J, Engelhard M, Oesterhelt F, Muller DJ Transducer binding establishes localized interactions to tune sensory rhodopsin II. Structure. 2008 Aug 6;16(8):1206–13	Structure	2008
Fonseca AV, Bauer N, Corbeil D The stem cell marker CD133 meets the endosomal compartment--new insights into the cell division of hematopoietic stem cells. Blood Cells Mol Dis. 2008 Sep-Oct;41(2):194–5	Blood Cells Mol Dis	2008
Bechstedt S, Howard J Hearing mechanics: a fly in your ear. Curr Biol. 2008 Sep 23;18(18):R869–70	Curr Biol	2008
Süss C, Solimena M Proteomic profiling of beta-cells using a classical approach – two-dimensional gel electrophoresis. Exp Clin Endocrinol Diabetes. 2008 Sep;116 Suppl 1:S13–20. Review	Exp Clin Endocrinol Diabetes	2008
Fish JL, Dehay C, Kennedy H, Huttner WB Making bigger brains-the evolution of neural-progenitor-cell division. J Cell Sci. 2008 Sep 1;121(Pt 17):2783–93. Review	J Cell Sci	2008
Korten T, Diez S Setting up roadblocks for kinesin-1: mechanism for the selective speed control of cargo carrying microtubules. Lab Chip. 2008 Sep;8(9):1441–7	Lab Chip	2008
Nitzsche B, Ruhnow F, Diez S Quantum-dot-assisted characterization of microtubule rotations during cargo transport. Nat Nanotechnol. 2008 Sep;3(9):552–6	Nat Nanotechnol	2008
Bormuth V, Jannasch A, Ander M, van Kats CM, van Blaaderen A, Howard J, Schäffer E Optical trapping of coated microspheres. Opt Express. 2008 Sep 1;16(18):13831–44	Opt Express	2008
Sanchez-Fernandez MA, Gallois A, Riedl T, Jurdic P, Hoflack B Osteoclasts control osteoblast chemotaxis via PDGF-BB/PDGF receptor beta signaling. PLoS One. 2008;3(10):e3537	PLoS One	2008
Winnenburg R, Wächter T, Plake C, Doms A, Schroeder M Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? Brief Bioinform. 2008 Nov;9(6):466–78. Review	Brief Bioinform	2008
Matos J, Lipp JJ, Bogdanova A, Guillot S, Okaz E, Junqueira M, Shevchenko A, Zachariae W Dbf4-dependent CDC7 kinase links DNA replication to the segregation of homologous chromosomes in meiosis I. Cell. 2008 Nov 14;135(4):662–78	Cell	2008
Kragl M, Knapp D, Nacu E, Khattak S, Schnapp E, Epperlein HH, Tanaka EM Novel insights into the flexibility of cell and positional identity during urodele limb regeneration. Cold Spring Harb Symp Quant Biol. 2008;73:583–92. Review	Cold Spring Harb Symp Quant Biol	2008
Grimard V, Massier J, Richter D, Schwudke D, Kalaidzidis Y, Fava E, Hermetter A, Thiele C siRNA screening reveals JNK2 as an evolutionary conserved regulator of triglyceride homeostasis. J Lipid Res. 2008 Nov;49(11):2427–40	J Lipid Res	2008
Ohrt T, Mütze J, Staroske W, Weinmann L, Höck J, Crell K, Meister G, Schwille P Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells. Nucleic Acids Res. 2008 Nov;36(20):6439–49	Nucleic Acids Res	2008
Bauer N, Fonseca AV, Florek M, Freund D, Jászai J, Bornhäuser M, Fargeas CA, Corbeil D New insights into the cell biology of hematopoietic progenitors by studying prominin-1 (CD133). Cells Tissues Organs. 2008;188(1–2):127–38. Review	Cells Tissues Organs	2008
Crevenna AH, Madathil S, Cohen DN, Wagenbach M, Fahmy K, Howard J Secondary structure and compliance of a predicted flexible domain in kinesin-1 necessary for cooperation of motors. Biophys J. 2008 Dec;95(11):5216–27. Epub 2008 Sep 5	Biophys J	2008
Marsico A, Labudde D, Sapra T, Muller DJ, Schroeder M A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy. Bioinformatics. 2007 Jan 15;23(2):e231–6	Bioinformatics	2007
Schlaitz AL, Srayko M, Dammermann A, Quintin S, Wielsch N, MacLeod I, de Robillard Q, Zinke A, Yates JR 3rd, Müller-Reichert T, Shevchenko A, Oegema K, Hyman AA The C. elegans RSA complex localizes protein phosphatase 2A to centrosomes and regulates mitotic spindle assembly. Cell. 2007 Jan 12;128(1):115–27	Cell	2007
Nikolova G, Strilic B, Lammert E The vascular niche and its basement membrane. Trends Cell Biol. 2007 Jan;17(1):19–25	Trends Cell Biol	2007
Bringmann H, Cowan CR, Kong J, Hyman AA LET-99, GOA-1/GPA-16, and GPR-1/2 are required for aster-positioned cytokinesis. Curr Biol. 2007 Jan 23;17(2):185–91. Epub 2006 Dec 28	Curr Biol	2007
Lingwood D, Simons K Detergent resistance as a tool in membrane research. Nat Protoc. 2007;2(9):2159–65	Nat Protoc	2007
Vogel SK, Raabe I, Dereli A, Maghelli N, Tolić-Nørrelykke I Interphase microtubules determine the initial alignment of the mitotic spindle. Curr Biol. 2007 Mar 6;17(5):438–44	Curr Biol	2007
Mortiboys HJ, Schaefer J, Reichmann H, Jackson S Mitochondrial dysfunction in Parkinson's disease--revisited. Neurol Neurochir Pol. 2007 Mar-Apr;41(2):150–9	Neurol Neurochir Pol	2007
Bormuth V, Howard J, Schäffer E LED illumination for video-enhanced DIC imaging of single microtubules. J Microsc. 2007 Apr;226(Pt 1):1–5	J Microsc	2007
Kittler R, Surendranath V, Heninger AK, Slabicki M, Theis M, Putz G, Franke K, Caldarelli A, Grabner H, Kozak K, Wagner J, Rees E, Korn B, Frenzel C, Sachse C, Sönnichsen B, Guo J, Schelter J, Burchard J, Linsley PS, Jackson AL, Habermann B, Buchholz F Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies. Nat Methods. 2007 Apr;4(4):337–44	Nat Methods	2007
Fierro F, Illmer T, Jing D, Schleyer E, Ehninger G, Boxberger S, Bornhäuser M Inhibition of platelet-derived growth factor receptorbeta by imatinib mesylate suppresses proliferation and alters differentiation of human mesenchymal stem cells in vitro. Cell Prolif. 2007 Jun;40(3):355–66. PMID: 17531080 [PubMed – indexed for MEDLINE]	Cell Proliferat	2007
Kanczkowski W, Morawietz H, Ziegler CG, Funk RH, Schmitz G, Zacharowski K, Mohn CE, Ehrhart-Bornstein M, Bornstein SR Pam3CSK4 and LTA-TLRs ligands associated with microdomains induce IL8 production in human adrenocortical cancer cells. Horm Metab Res. 2007 Jun;39(6):457–60	Horm Metab Res	2007
Cisneros DA, Friedrichs J, Taubenberger A, Franz CM, Muller DJ Creating ultrathin nanoscopic collagen matrices for biological and biotechnological applications. Small. 2007 Jun;3(6):956–63	Small	2007
Pulvers JN, Schenk J, Arai Y, Fei JF, Saito K, Huttner WB On the origin of neurons. Genome Biol. 2007;8(7):311	Genome Biol	2007
Kucera T, Eglinger J, Strilić B, Lammert E Vascular lumen formation from a cell biological perspective. Novartis Found Symp. 2007;283:46–56; discussion 56–60, 238–41	Novartis Found Symp	2007
Listerman I, Bledau AS, Grishina I, Neugebauer KM Extragenic accumulation of RNA polymerase II enhances transcription by RNA polymerase III. PLoS Genet. 2007 Nov;3(11):e212	PLoS Genet	2007
Farhadifar R, Röper JC, Aigouy B, Eaton S, Jülicher F The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packing. Curr Biol. 2007 Dec 18;17(24):2095–104	Curr Biol	2007
Mende S, Koch R, Schmiedel J, Reichmann H, Storch A Association of mitochondrial disorders with lymphoid malignancies. Mitochondrion. 2007 Dec;7(6):401–3	Mitochondrion	2007
Kittler R, Pelletier L, Heninger AK, Slabicki M, Theis M, Miroslaw L, Poser I, Lawo S, Grabner H, Kozak K, Wagner J, Surendranath V, Richter C, Bowen W, Jackson AL, Habermann B, Hyman AA, Buchholz F Genome-scale RNAi profiling of cell division in human tissue culture cells. Nat Cell Biol. 2007 Dec;9(12):1401–12	Nat Cell Biol	2007
Link V, Shevchenko A, Heisenberg CP Proteomics of early zebrafish embryos. BMC Dev Biol. 2006 Jan 13;6:1	BMC Dev Biol	2006
Kedrov A, Janovjak H, Ziegler C, Kuhlbrandt W, Muller DJ Observing folding pathways and kinetics of a single sodium-proton antiporter from Escherichia coli. J Mol Biol. 2006 Jan 6;355(1):2–8. Epub 2005 Nov 8	J Mol Biol	2006
Sapra KT, Besir H, Oesterhelt D, Muller DJ Characterizing molecular interactions in different bacteriorhodopsin assemblies by single-molecule force spectroscopy. J Mol Biol. 2006 Jan 27;355(4):640–50. Epub 2005 Nov 17	J Mol Biol	2006
Meder D, Moreno MJ, Verkade P, Vaz WL, Simons K Phase coexistence and connectivity in the apical membrane of polarized epithelial cells. Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):329–34. Epub 2006 Jan 3	Proc Natl Acad Sci	2006
Sobkow L, Epperlein HH, Herklotz S, Straube WL, Tanaka EM A germline GFP transgenic axolotl and its use to track cell fate: dual origin of the fin mesenchyme during development and the fate of blood cells during regeneration. Dev Biol. 2006 Feb 15;290(2):386–97. Epub 2006 Jan 4	Dev Biol	2006
Baust T, Czupalla C, Krause E, Bourel-Bonnet L, Hoflack B Proteomic analysis of adaptor protein 1A coats selectively assembled on liposomes. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3159–64. Epub 2006 Feb 21	Proc Natl Acad Sci	2006
Ejsing CS, Sampaio JL, Surendranath V, Duchoslav E, Ekroos K, Klemm RW, Simons K, Shevchenko A Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry. Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2136–41. Epub 2009 Jan 27	Proc Natl Acad Sci	2006
Nikolova G, Jabs N, Konstantinova I, Domogatskaya A, Tryggvason K, Sorokin L, Fässler R, Gu G, Gerber HP, Ferrara N, Melton DA, Lammert E The vascular basement membrane: a niche for insulin gene expression and Beta cell proliferation. Dev Cell. 2006 Mar;10(3):397–405	Dev Cell	2006
Schuck S, Simons K Controversy fuels trafficking of GPI-anchored proteins. J Cell Biol. 2006 Mar 27;172(7):963–5	J Cell Biol	2006
Ejsing CS, Moehring T, Bahr U, Duchoslav E, Karas M, Simons K, Shevchenko A Collision-induced dissociation pathways of yeast sphingolipids and their molecular profiling in total lipid extracts: a study by quadrupole TOF and linear ion trap-orbitrap mass spectrometry. J Mass Spectrom. 2006 Mar;41(3):372–89	J Mass Spectrom	2006
Kedrov A, Müller DJ Characterizing folding, structure, molecular interactions and ligand gated activation of single sodium/proton antiporters. Naunyn Schmiedebergs Arch Pharmacol. 2006 Mar;372(6):400–12. Epub 2006 Mar 17. Review	Naunyn Schmiedebergs Arch Pharmacol	2006
Ohrt T, Merkle D, Birkenfeld K, Echeverri CJ, Schwille P In situ fluorescence analysis demonstrates active siRNA exclusion from the nucleus by Exportin 5. Nucleic Acids Res. 2006 Mar 6;34(5):1369–80. Print 2006	Nucleic Acids Res	2006
Dudu V, Bittig T, Entchev E, Kicheva A, Jülicher F, González-Gaitán M Postsynaptic mad signaling at the Drosophila neuromuscular junction. Curr Biol. 2006 Apr 4;16(7):625–35. Erratum in: Curr Biol. 2006 Jun 20;16(12):1256	Curr Biol	2006
Langenberg T, Dracz T, Oates AC, Heisenberg CP, Brand M Analysis and visualization of cell movement in the developing zebrafish brain. Dev Dyn. 2006 Apr;235(4):928–33	Dev Dynam	2006
Glaser S, Schaft J, Lubitz S, Vintersten K, van der Hoeven F, Tufteland KR, Aasland R, Anastassiadis K, Ang SL, Stewart AF Multiple epigenetic maintenance factors implicated by the loss of Mll2 in mouse development. Development. 2006 Apr;133(8):1423–32. Epub 2006 Mar 15	Development	2006
Cisneros DA, Muller DJ, Daud SM, Lakey JH An approach to prepare membrane proteins for single-molecule imaging. Angew Chem Int Ed Engl. 2006 May 12;45(20):3252–6. No abstract available	Angew Chem Int Ed	2006
Cunha AC, Weigle B, Kiessling A, Bachmann M, Rieber EP Tissue-specificity of prostate specific antigens: comparative analysis of transcript levels in prostate and non-prostatic tissues. Cancer Lett. 2006 May 18;236(2):229–38. Epub 2005 Jul 19	Cancer Lett	2006
Trajkovski M, Mziaut H, Schwarz PE, Solimena M Genes of type 2 diabetes in beta cells. Endocrinol Metab Clin North Am. 2006 Jun;35(2):357–69, x. Review	Endocrinol Metab Clin	2006
Link V, Carvalho L, Castanon I, Stockinger P, Shevchenko A, Heisenberg CP Identification of regulators of germ layer morphogenesis using proteomics in zebrafish. J Cell Sci. 2006 May 15;119(Pt 10):2073–83. Epub 2006 Apr 25	J Cell Sci	2006
Benenati G, Penkov S, Müller-Reichert T, Entchev EV, Kurzchalia TV Two cytochrome P450s in Caenorhabditis elegans are essential for the organization of eggshell, correct execution of meiosis and the polarization of embryo. Mech Dev. 2009 May-Jun;126(5–6):382–93. Epub 2009 Feb 11	Mech Develop	2006
Proszynski TJ, Klemm R, Bagnat M, Gaus K, Simons K Plasma membrane polarization during mating in yeast cells. J Cell Biol. 2006 Jun 19;173(6):861–6. Epub 2006 Jun 12	J Cell Biol	2006
Cisneros DA, Hung C, Franz CM, Muller DJ Observing growth steps of collagen self-assembly by time-lapse high-resolution atomic force microscopy. J Struct Biol. 2006 Jun;154(3):232–45. Epub 2006 Mar 20	J Struct Biol	2006
Khalimonchuk O, Ott M, Funes S, Ostermann K, Rödel G, Herrmann JM Sequential processing of a mitochondrial tandem protein: insights into protein import in Schizosaccharomyces pombe. Eukaryot Cell. 2006 Jul;5(7):997–1006	Eukaryot Cell	2006
Fish JL, Kosodo Y, Enard W, Pääbo S, Huttner WB Aspm specifically maintains symmetric proliferative divisions of neuroepithelial cells. Proc Natl Acad Sci U S A. 2006 Jul 5;103(27):10438–43. Epub 2006 Jun 23	Proc Natl Acad Sci	2006
Dinu CZ, Opitz J, Pompe W, Howard J, Mertig M, Diez S Parallel manipulation of bifunctional DNA molecules on structured surfaces using kinesin-driven microtubules. Small. 2006 Aug;2(8–9):1090–8	Small	2006
Erler A, Maresca M, Fu J, Stewart AF Recombineering reagents for improved inducible expression and selection marker re-use in Schizosaccharomyces pombe. Yeast. 2006 Aug;23(11):813–23	Yeast	2006
Ejsing CS, Duchoslav E, Sampaio J, Simons K, Bonner R, Thiele C, Ekroos K, Shevchenko A Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning. Anal Chem. 2006 Sep 1;78(17):6202–14	Anal Chem	2006
Schonegg S, Hyman AA CDC-42 and RHO-1 coordinate acto-myosin contractility and PAR protein localization during polarity establishment in C. elegans embryos. Development. 2006 Sep;133(18):3507–16. Epub 2006 Aug 9	Development	2006
Wielsch N, Thomas H, Surendranath V, Waridel P, Frank A, Pevzner P, Shevchenko A Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches. J Proteome Res. 2006 Sep;5(9):2448–56. PMID: 16944958 [PubMed – indexed for MEDLINE]	J Proteome Res	2006
Varga V, Helenius J, Tanaka K, Hyman AA, Tanaka TU, Howard J Yeast kinesin-8 depolymerizes microtubules in a length-dependent manner. Nat Cell Biol. 2006 Sep;8(9):957–62. Epub 2006 Aug 13	Nat Cell Biol	2006
Listerman I, Sapra AK, Neugebauer KM Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. Nat Struct Mol Biol. 2006 Sep;13(9):815–22. Epub 2006 Aug 20	Nat Struct Mol Biol	2006
Kedrov A, Ziegler C, Muller DJ Differentiating ligand and inhibitor interactions of a single antiporter. J Mol Biol. 2006 Oct 6;362(5):925–32. Epub 2006 Jul 28	J Mol Biol	2006
Reuther C, Hajdo L, Tucker R, Kasprzak AA, Diez S Biotemplated nanopatterning of planar surfaces with molecular motors. Nano Lett. 2006 Oct;6(10):2177–83. PMID: 17034079 [PubMed – indexed for MEDLINE]	Nano Lett	2006
Sarov M, Schneider S, Pozniakovski A, Roguev A, Ernst S, Zhang Y, Hyman AA, Stewart AF A recombineering pipeline for functional genomics applied to Caenorhabditis elegans. Nat Methods. 2006 Oct;3(10):839–44	Nat Methods	2006
Demontis F, Habermann B, Dahmann C PDZ-domain-binding sites are common among cadherins. Dev Genes Evol. 2006 Nov;216(11):737–41. Epub 2006 Oct 5	Dev Genes Evol	2006
Schuck S, Gerl MJ, Ang A, Manninen A, Keller P, Mellman I, Simons K Rab10 is involved in basolateral transport in polarized Madin-Darby canine kidney cells. Traffic. 2007 Jan;8(1):47–60. Epub 2006 Nov 21	Traffic	2006
Balana B, Nicoletti C, Zahanich I, Graf EM, Christ T, Boxberger S, Ravens U 5-Azacytidine induces changes in electrophysiological properties of human mesenchymal stem cells. Cell Res. 2006 Dec;16(12):949–60	Cell Res	2006
Witzel S, Zimyanin V, Carreira-Barbosa F, Tada M, Heisenberg CP Wnt11 controls cell contact persistence by local accumulation of Frizzled 7 at the plasma membrane. J Cell Biol. 2006 Dec 4;175(5):791–802. Epub 2006 Nov 27	J Cell Biol	2006
Schnapp E, Tanaka EM Quantitative evaluation of morpholino-mediated protein knockdown of GFP, MSX1, and PAX7 during tail regeneration in Ambystoma mexicanum. Dev Dyn. 2005 Jan;232(1):162–70	Dev Dynam	2005
Meder D, Shevchenko A, Simons K, Füllekrug J Gp135/podocalyxin and NHERF-2 participate in the formation of a preapical domain during polarization of MDCK cells. J Cell Biol. 2005 Jan 17;168(2):303–13. Epub 2005 Jan 10	J Cell Biol	2005
Kuerschner L, Ejsing CS, Ekroos K, Shevchenko A, Anderson KI, Thiele C Polyene-lipids: a new tool to image lipids. Nat Methods. 2005 Jan;2(1):39–45. Epub 2004 Dec 21	Nat Methods	2005
Kittler R, Pelletier L, Ma C, Poser I, Fischer S, Hyman AA, Buchholz F RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells. Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2396–401. Epub 2005 Feb 3	Proc Natl Acad Sci	2005
Cisneros DA, Oesterhelt D, Müller DJ Probing origins of molecular interactions stabilizing the membrane proteins halorhodopsin and bacteriorhodopsin. Structure. 2005 Feb;13(2):235–42	Structure	2005
Oelschlaegel T, Schwickart M, Matos J, Bogdanova A, Camasses A, Havlis J, Shevchenko A, Zachariae W The yeast APC/C subunit Mnd2 prevents premature sister chromatid separation triggered by the meiosis-specific APC/C-Ama1. Cell. 2005 Mar 25;120(6):773–88	Cell	2005
Shen J, Dahmann C The role of Dpp signaling in maintaining the Drosophila anteroposterior compartment boundary. Dev Biol. 2005 Mar 1;279(1):31–43	Dev Biol	2005
Noetzel TL, Drechsel DN, Hyman AA, Kinoshita K A comparison of the ability of XMAP215 and tau to inhibit the microtubule destabilizing activity of XKCM1. Philos Trans R Soc Lond B Biol Sci. 2005 Mar 29;360(1455):591–4	Philos Trans R Soc Lond B Biol Sci	2005
Meder D, Simons K Cell biology. Ras on the roundabout. Science. 2005 Mar 18;307(5716):1731–3. No abstract available	Science	2005
Shen J, Dahmann C Extrusion of cells with inappropriate Dpp signaling from Drosophila wing disc epithelia. Science. 2005 Mar 18;307(5716):1789–90	Science	2005
Kittler R, Buchholz F Functional genomic analysis of cell division by endoribonuclease-prepared siRNAs. Cell Cycle. 2005 Apr;4(4):564–7. Epub 2005 Apr 19. Review	Cell Cycle	2005
Kronekova Z, Rödel G Organization of assembly factors Cbp3p and Cbp4p and their effect on bc(1) complex assembly in Saccharomyces cerevisiae. Curr Genet. 2005 Apr;47(4):203–12. Epub 2005 Mar 10	Curr Genet	2005
Khalimonchuk O, Ostermann K, Rödel G Evidence for the association of yeast mitochondrial ribosomes with Cox11p, a protein required for the Cu(B) site formation of cytochrome c oxidase. Curr Genet. 2005 Apr;47(4):223–33. Epub 2005 Mar 18	Curr Genet	2005
Suchanek M, Radzikowska A, Thiele C Photo-leucine and photo-methionine allow identification of protein-protein interactions in living cells. Nat Methods. 2005 Apr;2(4):261–7. Epub 2005 Mar 23	Nat Methods	2005
Hoepfner S, Severin F, Cabezas A, Habermann B, Runge A, Gillooly D, Stenmark H, Zerial M Modulation of receptor recycling and degradation by the endosomal kinesin KIF16B. Cell. 2005 May 6;121(3):437–50	Cell	2005
Panáková D, Sprong H, Marois E, Thiele C, Eaton S Lipoprotein particles are required for Hedgehog and Wingless signalling. Nature. 2005 May 5;435(7038):58–65	Nature	2005
Langenberg T, Brand M Lineage restriction maintains a stable organizer cell population at the zebrafish midbrain-hindbrain boundary. Development. 2005 Jul;132(14):3209–16. Epub 2005 Jun 15	Development	2005
Schnapp E, Kragl M, Rubin L, Tanaka EM Hedgehog signaling controls dorsoventral patterning, blastema cell proliferation and cartilage induction during axolotl tail regeneration. Development. 2005 Jul;132(14):3243–53	Development	2005
Kedrov A, Krieg M, Ziegler C, Kuhlbrandt W, Muller DJ Locating ligand binding and activation of a single antiporter. EMBO Rep. 2005 Jul;6(7):668–74	EMBO Rep	2005
Riedel IH, Kruse K, Howard J A self-organized vortex array of hydrodynamically entrained sperm cells. Science. 2005 Jul 8;309(5732):300–3	Science	2005
Ozlü N, Srayko M, Kinoshita K, Habermann B, O'toole ET, Müller-Reichert T, Schmalz N, Desai A, Hyman AA An essential function of the C. elegans ortholog of TPX2 is to localize activated aurora A kinase to mitotic spindles. Dev Cell. 2005 Aug;9(2):237–48	Dev Cell	2005
Bringmann H, Hyman AA A cytokinesis furrow is positioned by two consecutive signals. Nature. 2005 Aug 4;436(7051):731–4	Nature	2005
Rink J, Ghigo E, Kalaidzidis Y, Zerial M Rab conversion as a mechanism of progression from early to late endosomes. Cell. 2005 Sep 9;122(5):735–49	Cell	2005
Zahanich I, Graf EM, Heubach JF, Hempel U, Boxberger S, Ravens U Molecular and functional expression of voltage-operated calcium channels during osteogenic differentiation of human mesenchymal stem cells. J Bone Miner Res. 2005 Sep;20(9):1637–46. Epub 2005 May 31	J Bone Miner Res	2005
Kovalchuk A, Senam S, Mauersberger S, Barth G Tyl6, a novel Ty3/gypsy-like retrotransposon in the genome of the dimorphic fungus Yarrowia lipolytica. Yeast. 2005 Sep;22(12):979–91	Yeast	2005
Ulrich F, Krieg M, Schötz EM, Link V, Castanon I, Schnabel V, Taubenberger A, Mueller D, Puech PH, Heisenberg CP Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin. Dev Cell. 2005 Oct;9(4):555–64	Dev Cell	2005
Kittler R, Heninger AK, Franke K, Habermann B, Buchholz F Production of endoribonuclease-prepared short interfering RNAs for gene silencing in mammalian cells. Nat Methods. 2005 Oct;2(10):779–84. No abstract available	Nat Methods	2005
Kalvodova L, Kahya N, Schwille P, Ehehalt R, Verkade P, Drechsel D, Simons K Lipids as modulators of proteolytic activity of BACE: involvement of cholesterol, glycosphingolipids, and anionic phospholipids in vitro. J Biol Chem. 2005 Nov 4;280(44):36815–23. Epub 2005 Aug 22	J Cell Biol	2005
Glaser S, Anastassiadis K, Stewart AF Current issues in mouse genome engineering. Nat Genet. 2005 Nov;37(11):1187–93. Review	Nat Genetics	2005
Liska AJ, Sunyaev S, Shilov IN, Schaeffer DA, Shevchenko A Error-tolerant EST database searches by tandem mass spectrometry and multiTag software. Proteomics. 2005 Nov;5(16):4118–22	Proteomics	2005
Classen AK, Anderson KI, Marois E, Eaton S Hexagonal packing of Drosophila wing epithelial cells by the planar cell polarity pathway. Dev Cell. 2005 Dec;9(6):805–17	Dev Cell	2005
Khalimonchuk O, Rödel G Biogenesis of cytochrome c oxidase. Mitochondrion. 2005 Dec;5(6):363–88. Epub 2005 Sep 29. Review	Mitochondrion	2005
Proszynski TJ, Klemm RW, Gravert M, Hsu PP, Gloor Y, Wagner J, Kozak K, Grabner H, Walzer K, Bagnat M, Simons K, Walch-Solimena C A genome-wide visual screen reveals a role for sphingolipids and ergosterol in cell surface delivery in yeast. Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):17981–6. Epub 2005 Dec 5	Proc Natl Acad Sci	2005
Roguev A, Shevchenko A, Schaft D, Thomas H, Stewart AF, Shevchenko A A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics. 2004 Feb;3(2):125–32. Epub 2003 Nov 15	Mol Cell Proteomics	2004
Proszynski TJ, Simons K, Bagnat M O-glycosylation as a sorting determinant for cell surface delivery in yeast. Mol Biol Cell. 2004 Apr;15(4):1533–43. Epub 2004 Jan 23	Mol Biol Cell	2004
Schwickart M, Havlis J, Habermann B, Bogdanova A, Camasses A, Oelschlaegel T, Shevchenko A, Zachariae W Swm1/Apc13 is an evolutionarily conserved subunit of the anaphase-promoting complex stabilizing the association of Cdc16 and Cdc27. Mol Cell Biol. 2004 Apr;24(8):3562–76	Mol Cell Biol	2004
Schuck S, Manninen A, Honsho M, Füllekrug J, Simons K Generation of single and double knockdowns in polarized epithelial cells by retrovirus-mediated RNA interference. Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4912–7. Epub 2004 Mar 29	Proc Natl Acad Sci	2004
Straube WL, Brockes JP, Drechsel DN, Tanaka EM Plasticity and reprogramming of differentiated cells in amphibian regeneration: partial purification of a serum factor that triggers cell cycle re-entry in differentiated muscle cells. Cloning Stem Cells. 2004;6(4):333–44	Cloning Stem Cells	2004
Kedrov A, Ziegler C, Janovjak H, Kühlbrandt W, Müller DJ Controlled unfolding and refolding of a single sodium-proton antiporter using atomic force microscopy. J Mol Biol. 2004 Jul 23;340(5):1143–52	J Mol Biol	2004
Dudu V, Pantazis P, González-Gaitán M Membrane traffic during embryonic development: epithelial formation, cell fate decisions and differentiation. Curr Opin Cell Biol. 2004 Aug;16(4):407–14. Review	Curr Opin Cell Biol	2004
Schnatwinkel C, Christoforidis S, Lindsay MR, Uttenweiler-Joseph S, Wilm M, Parton RG, Zerial M The Rab5 effector Rabankyrin-5 regulates and coordinates different endocytic mechanisms. PLoS Biol. 2004 Sep;2(9):E261. Epub 2004 Aug 24	PLoS Biol	2004
Khattak S, Darai G, Rösen-Wolff A Puumala virus nucleocapsid protein expressed in transgenic plants is not immunogenic after oral administration. Virus Genes. 2004 Aug;29(1):109–16	Virus Genes	2004
Liska AJ, Shevchenko A, Pick U, Katz A Enhanced photosynthesis and redox energy production contribute to salinity tolerance in Dunaliella as revealed by homology-based proteomics. Plant Physiol. 2004 Sep;136(1):2806–17. Epub 2004 Aug 27	Plant Physiol	2004
Liska AJ, Popov AV, Sunyaev S, Coughlin P, Habermann B, Shevchenko A, Bork P, Karsenti E, Shevchenko A Homology-based functional proteomics by mass spectrometry: application to the Xenopus microtubule-associated proteome. Proteomics. 2004 Sep;4(9):2707–21	Proteomics	2004
Konstantinova I, Lammert E Microvascular development: learning from pancreatic islets. Bioessays. 2004 Oct;26(10):1069–75. Review	Bioessays	2004
Trajkovski M, Mziaut H, Altkrüger A, Ouwendijk J, Knoch KP, Müller S, Solimena M Nuclear translocation of an ICA512 cytosolic fragment couples granule exocytosis and insulin expression in {beta}-cells. J Cell Biol. 2004 Dec 20;167(6):1063–74. Epub 2004 Dec 13	J Cell Biol	2004
Schuck S, Simons K Polarized sorting in epithelial cells: raft clustering and the biogenesis of the apical membrane. J Cell Sci. 2004 Dec 1;117(Pt 25):5955–64. Review	J Cell Sci	2004
Kittler R, Putz G, Pelletier L, Poser I, Heninger AK, Drechsel D, Fischer S, Konstantinova I, Habermann B, Grabner H, Yaspo ML, Himmelbauer H, Korn B, Neugebauer K, Pisabarro MT, Buchholz F An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division. Nature. 2004 Dec 23;432(7020):1036–40. PMID: 15616564 [PubMed – indexed for MEDLINE]	Nature	2004
Liska AJ, Shevchenko A Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications. Proteomics. 2003 Jan;3(1):19–28. Review	Proteomics	2003
Roguev A, Schaft D, Shevchenko A, Aasland R, Shevchenko A, Stewart AF High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. J Biol Chem. 2003 Mar 7;278(10):8487–93. Epub 2002 Dec 17	J Biol Chem	2003
van Breugel M, Drechsel D, Hyman A Stu2p, the budding yeast member of the conserved Dis1/XMAP215 family of microtubule-associated proteins is a plus end-binding microtubule destabilizer. J Cell Biol. 2003 Apr 28;161(2):359–69	J Cell Biol	2003
Siekmann AF, Brand M Distinct tissue-specificity of three zebrafish ext1 genes encoding proteoglycan modifying enzymes and their relationship to somitic Sonic hedgehog signaling. Dev Dyn. 2005 Feb;232(2):498–505	Dev Dynam	2003
Schuck S, Honsho M, Ekroos K, Shevchenko A, Simons K Resistance of cell membranes to different detergents. Proc Natl Acad Sci U S A. 2003 May 13;100(10):5795–800. Epub 2003 Apr 29	Proc Natl Acad Sci	2003
Kotovic KM, Lockshon D, Boric L, Neugebauer KM Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast. Mol Cell Biol. 2003 Aug;23(16):5768–79	Mol Cell Biol	2003
Kittler R, Buchholz F RNA interference: gene silencing in the fast lane. Semin Cancer Biol. 2003 Aug;13(4):259–65. Review	Semin Cancer Biol	2003
Nikolova G, Lammert E Interdependent development of blood vessels and organs. Cell Tissue Res. 2003 Oct;314(1):33–42. Epub 2003 Aug 1. Review	Cell Tissue Res	2003
Langenberg T, Brand M, Cooper MS Imaging brain development and organogenesis in zebrafish using immobilized embryonic explants. Dev Dyn. 2003 Nov;228(3):464–74	Dev Dynam	2003
Ulrich F, Concha ML, Heid PJ, Voss E, Witzel S, Roehl H, Tada M, Wilson SW, Adams RJ, Soll DR, Heisenberg CP Slb/Wnt11 controls hypoblast cell migration and morphogenesis at the onset of zebrafish gastrulation. Development. 2003 Nov;130(22):5375–84. Epub 2003 Sep 16	Development	2003
Balana B, Dobrev D, Wettwer E, Christ T, Knaut M, Ravens U Decreased ATP-sensitive K(+) current density during chronic human atrial fibrillation. J Mol Cell Cardiol. 2003 Dec;35(12):1399–405	J Mol Cell Cardiol	2003
Khattak S, Darai G, Süle S, Rösen-Wolff A Characterization of expression of Puumala virus nucleocapsid protein in transgenic plants. Intervirology. 2002;45(4–6):334–9	Intervirology	2002
Roguev A, Schaft D, Shevchenko A, Pijnappel WW, Wilm M, Aasland R, Stewart AF The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4. EMBO J. 2001 Dec 17;20(24):7137–48	EMBO J	2001

Apply

2019 PhD Positions

Interview Week: 11-14 March 2019