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Publications
Our PhD students have published great scientific stories resulting from their discoveries. View below a selection of top first-author publications resulting from their time in the IMPRS-CellDevoSys, or search the publication database on our main Max Planck Institute webpage.
Title | Journal | Publication year |
---|---|---|
Turrero García M, Chang Y, Arai Y, Huttner WB S-phase duration is the main target of cell cycle regulation in neural progenitors of developing ferret neocortex. J Comp Neurol. 2016 Feb 15;524(3):456–70 |
J Comp Neurol | 2016 |
Stapel LC, Lombardot B, Broaddus C, Kainmueller D, Jug F, Myers EW, Vastenhouw NL Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos. Development. 2016 Feb 1;143(3):540–6 |
Development | 2016 |
Naganathan SR, Middelkoop TC, Fürthauer S, Grill SW Actomyosin-driven left-right asymmetry: from molecular torques to chiral self organization. Curr Opin Cell Biol. 2016 Feb;38:24–30 |
Curr Opin Cell Biol | 2016 |
Lisica A, Engel C, Jahnel M, Roldán É, Galburt EA, Cramer P, Grill SW Mechanisms of backtrack recovery by RNA polymerases I and II. Proc Natl Acad Sci U S A. 2016 Feb 29. pii: 201517011 |
Proc Natl Acad Sci U S A | 2016 |
Millonigg S, Minasaki R, Nousch M, Novak J, Eckmann CR Correction: GLD-4-Mediated Translational Activation Regulates the Size of the Proliferative Germ Cell Pool in the Adult C. elegans Germ Line. PLoS Genet. 2016 Feb 9;12(2):e1005862 |
PLoS Genet | 2016 |
Schürmann M, Scholze J, Müller P, Guck J, Chan CJ Cell nuclei have lower refractive index and mass density than cytoplasm. J Biophotonics. 2016 Mar 24 |
J Biophotonics | 2016 |
Munder MC, Midtvedt D, Franzmann T, Nüske E, Otto O, Herbig M, Ulbricht E, Müller P, Taubenberger A, Maharana S, Malinovska L, Richter D, Guck J, Zaburdaev V, Alberti S A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy. Elife. 2016 Mar 22;5. pii: e09347 |
Elife | 2016 |
Afshar Y, Sbalzarini IF A Parallel Distributed-Memory Particle Method Enables Acquisition-Rate Segmentation of Large Fluorescence Microscopy Images. PLoS One. 2016 Apr 5;11(4):e0152528 |
PLoS One | 2016 |
Geyer VF, Sartori P, Friedrich BM, Jülicher F, Howard J Independent Control of the Static and Dynamic Components of the Chlamydomonas Flagellar Beat. Curr Biol. 2016 Apr 25;26(8):1098–103 |
Curr Biol | 2016 |
Villaseñor R, Kalaidzidis Y, Zerial M Signal processing by the endosomal system. Curr Opin Cell Biol. 2016 Apr;39:53–60 |
Curr Opin Cell Biol | 2016 |
Erkut C, Gade VR, Laxman S, Kurzchalia TV The glyoxylate shunt is essential for desiccation tolerance in C. elegans and budding yeast. Elife. 2016 Apr 19;5. pii: e13614 |
Elife | 2016 |
Stepanek L, Pigino G Microtubule doublets are double-track railways for intraflagellar transport trains. Science. 2016 May 6;352(6286):721–4 |
Science | 2016 |
Ananthanarayanan V, Tolić IM Single-molecule imaging of cytoplasmic dynein in vivo. Methods Cell Biol. 2015;125:1–12 |
Methods Cell Biol | 2015 |
Strzyz PJ, Lee HO, Sidhaye J, Weber IP, Leung LC, Norden C Interkinetic nuclear migration is centrosome independent and ensures apical cell division to maintain tissue integrity. Dev Cell. 2015 Jan 26;32(2):203–19 |
Dev Cell | 2015 |
Decker F, Brugués J Dissecting microtubule structures by laser ablation. Methods Cell Biol. 2015;125:61–75 |
Methods Cell Biol | 2015 |
Villaseñor R, Nonaka H, Del Conte-Zerial P, Kalaidzidis Y, Zerial M Regulation of EGFR signal transduction by analogue-to-digital conversion in endosomes. Elife. 2015 Feb 4;4 |
Elife | 2015 |
Florio M, Albert M, Taverna E, Namba T, Brandl H, Lewitus E, Haffner C, Sykes A, Wong FK, Peters J, Guhr E, Klemroth S, Prüfer K, Kelso J, Naumann R, Nüsslein I, Dahl A, Lachmann R, Pääbo S, Huttner WB Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion. Science. 2015 Feb 26. pii: aaa1975 |
Science | 2015 |
Heyn P, Kalinka AT, Tomancak P, Neugebauer KM Introns and gene expression: Cellular constraints, transcriptional regulation, and evolutionary consequences. Bioessays. 2015 Feb;37(2):148–54 |
Bioessays | 2015 |
Begasse ML, Leaver M, Vazquez F, Grill SW, Hyman AA Temperature Dependence of Cell Division Timing Accounts for a Shift in the Thermal Limits of C. elegans and C. briggsae. Cell Rep. 2015 Feb 4. pii: S2211–1247(15)00007–8 |
Cell Rep | 2015 |
Khaliullina H, Bilgin M, Sampaio JL, Shevchenko A, Eaton S Endocannabinoids are conserved inhibitors of the Hedgehog pathway. Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3415–20 |
Proc Natl Acad Sci U S A | 2015 |
Bergert M, Erzberger A, Desai RA, Aspalter IM, Oates AC, Charras G, Salbreux G, Paluch EK Force transmission during adhesion-independent migration. Nat Cell Biol. 2015 Apr;17(4):524–9 |
Nat Cell Biol | 2015 |
Turrero García M, Chang Y, Arai Y, Huttner WB S-phase duration is the main target of cell cycle regulation in neural progenitors of developing ferret neocortex. J Comp Neurol. 2015 May 10 |
J Comp Neurol | 2015 |
Dunst S, Kazimiers T, von Zadow F, Jambor H, Sagner A, Brankatschk B, Mahmoud A, Spannl S, Tomancak P, Eaton S, Brankatschk M Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila. Dev Cell. 2015 May 4;33(3):351–65 |
Dev Cell | 2015 |
Malinovska L, Palm S, Gibson K, Verbavatz JM, Alberti S Dictyostelium discoideum has a highly Q/N-rich proteome and shows an unusual resilience to protein aggregation. Proc Natl Acad Sci U S A. 2015 May 19;112(20):E2620–9 |
Proc Natl Acad Sci U S A | 2015 |
Machyna M, Neugebauer KM, Staněk D Coilin: The first 25 years. RNA Biol. 2015;12(6):590–6 |
RNA Biol | 2015 |
Kumichel A, Kapp K, Knust E A Conserved Di-Basic Motif of Drosophila Crumbs Contributes to Efficient ER Export. Traffic. 2015 Jun;16(6):604–16 |
Traffic | 2015 |
Coelho M, Tolić IM Asymmetric damage segregation at cell division via protein aggregate fusion and attachment to organelles. Bioessays. 2015 Jul;37(7):740–7 |
Bioessays | 2015 |
Kroschwald S, Maharana S, Mateju D, Malinovska L, Nüske E, Poser I, Richter D, Alberti S Promiscuous interactions and protein disaggregases determine the material state of stress-inducible RNP granules. Elife. 2015 Aug 4;4:e06807 |
Elife | 2015 |
Wong FK, Fei JF, Mora-Bermúdez F, Taverna E, Haffner C, Fu J, Anastassiadis K, Stewart AF, Huttner WB Sustained Pax6 Expression Generates Primate-like Basal Radial Glia in Developing Mouse Neocortex. PLoS Biol. 2015 Aug 7;13(8):e1002217 |
PLoS Biol | 2015 |
Erkut C, Kurzchalia TV The C. elegans dauer larva as a paradigm to study metabolic suppression and desiccation tolerance. Planta. 2015 Aug;242(2):389–96 |
Planta | 2015 |
Herzel L, Neugebauer KM Quantification of co-transcriptional splicing from RNA-Seq data. Methods. 2015 Sep 1;85:36–43 |
Methods | 2015 |
Jahr W, Schmid B, Schmied C, Fahrbach FO, Huisken J Hyperspectral light sheet microscopy. Nat Commun. 2015 Sep 2;6:7990 |
Nat Commun | 2015 |
Malinovska L, Alberti S Protein misfolding in Dictyostelium: using a freak of nature to gain insight into a universal problem. Prion. 2015 Nov 3:0 |
Prion | 2015 |
Lavrynenko O, Rodenfels J, Carvalho M, Dye NA, Lafont R, Eaton S, Shevchenko A The ecdysteroidome of Drosophila: influence of diet and development. Development. 2015 Nov 1;142(21):3758–68 |
Development | 2015 |
Hibbel A, Bogdanova A, Mahamdeh M, Jannasch A, Storch M, Schäffer E, Liakopoulos D, Howard J Kinesin Kip2 enhances microtubule growth in vitro through length-dependent feedback on polymerization and catastrophe. Elife. 2015 Nov 18;4. pii: e10542 |
Elife | 2015 |
Schmied C, Steinbach P, Pietzsch T, Preibisch S, Tomancak P An automated workflow for parallel processing of large multiview SPIM recordings. Bioinformatics. 2015 Dec 1. pii: btv706 |
Bioinformatics | 2015 |
Weber M, Huisken J In vivo imaging of cardiac development and function in zebrafish using light sheet microscopy. Swiss Med Wkly. 2015 Dec 23;145:w14227 |
Swiss Med Wkly | 2015 |
Lin YH, Currinn H, Pocha SM, Rothnie A, Wassmer T, Knust E AP-2-complex-mediated endocytosis of Drosophila Crumbs regulates polarity by antagonizing Stardust. J Cell Sci. 2015 Dec 15;128(24):4538–49 |
J Cell Sci | 2015 |
Morales-Navarrete H, Segovia-Miranda F, Klukowski P, Meyer K, Nonaka H, Marsico G, Chernykh M, Kalaidzidis A, Zerial M, Kalaidzidis Y A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture. Elife. 2015 Dec 27;4. pii: e11214 |
Elife | 2015 |
Luz M, Spannl-Müller S, Ozhan G, Kagermeier-Schenk B, Rhinn M, Weidinger G, Brand M Dynamic Association with Donor Cell Filopodia and Lipid-Modification Are Essential Features of Wnt8a during Patterning of the Zebrafish Neuroectoderm. PLoS One. 2014 Jan 10;9(1):e84922 |
PLoS One | 2014 |
Heyn P, Kircher M, Dahl A, Kelso J, Tomancak P, Kalinka AT, Neugebauer KM The earliest transcribed zygotic genes are short, newly evolved, and different across species. Cell Rep. 2014 Jan 30;6(2):285–92 |
Cell Rep | 2014 |
Weber M, Mickoleit M, Huisken J Multilayer mounting for long-term light sheet microscopy of zebrafish. J Vis Exp. 2014 Feb 27;(84):e51119 |
J Vis Exp | 2014 |
Stapel LC, Vastenhouw NL Message control in developmental transitions; deciphering chromatin's role using zebrafish genomics. Brief Funct Genomics. 2014 Mar;13(2):106–20 |
Brief Funct Genomics | 2014 |
Kumichel A, Knust E Apical localisation of crumbs in the boundary cells of the Drosophila hindgut is independent of its canonical interaction partner stardust. PLoS One. 2014 Apr 7;9(4):e94038 |
PLoS One | 2014 |
Gurudev N, Yuan M, Knust E Chaoptin, prominin, eyes shut and crumbs form a genetic network controlling the apical compartment of Drosophila photoreceptor cells. Biol Open. 2014 Apr 4;3(5):332–41 |
Biol Open | 2014 |
Weber IP, Ramos AP, Strzyz PJ, Leung LC, Young S, Norden C Mitotic position and morphology of committed precursor cells in the zebrafish retina adapt to architectural changes upon tissue maturation. Cell Rep. 2014 Apr 24;7(2):386–97 |
Cell Rep | 2014 |
Wong FK, Haffner C, Huttner WB, Taverna E Microinjection of membrane-impermeable molecules into single neural stem cells in brain tissue. Nat Protoc. 2014 May;9(5):1170–82 |
Nat Protoc | 2014 |
Clark AG, Wartlick O, Salbreux G, Paluch EK Stresses at the cell surface during animal cell morphogenesis. Curr Biol. 2014 May 19;24(10):R484–94 |
Curr Biol | 2014 |
Swierczynska MM, Mateska I, Peitzsch M2, Bornstein SR, Chavakis T, Eisenhofer G, Lamounier-Zepter V, Eaton S Changes in morphology and function of adrenal cortex in mice fed a high-fat diet. Int J Obes (Lond). 2014 Jun 12 |
Int J Obes (Lond) | 2014 |
Florio M, Huttner WB Neural progenitors, neurogenesis and the evolution of the neocortex. Development. 2014 Jun;141(11):2182–94 |
Development | 2014 |
Coelho M, Lade SJ, Alberti S, Gross T, Tolić IM Fusion of protein aggregates facilitates asymmetric damage segregation. PLoS Biol. 2014 Jun 17;12(6):e1001886 |
PLoS Biol | 2014 |
Mickoleit M, Schmid B, Weber M, Fahrbach FO, Hombach S, Reischauer S, Huisken J High-resolution reconstruction of the beating zebrafish heart. Nat Methods. 2014 Sep;11(9):919–22 |
Nat Methods | 2014 |
Millonigg S, Minasaki R, Nousch M, Eckmann CR GLD-4-mediated translational activation regulates the size of the proliferative germ cell pool in the adult C. elegans germ line. PLoS Genet. 2014 Sep 25;10(9):e1004647 |
PLoS Genet | 2014 |
Podolski M, Mahamdeh M, Howard J Stu2, the budding yeast XMAP215/Dis1 homolog, promotes assembly of yeast microtubules by increasing growth rate and decreasing catastrophe frequency. J Biol Chem. 2014 Oct 10;289(41):28087–93 |
J Biol Chem | 2014 |
Wueseke O, Bunkenborg J, Hein MY, Zinke A, Viscardi V, Woodruff JB, Oegema K, Mann M, Andersen JS, Hyman AA The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix. Mol Biol Cell. 2014 Oct 1;25(19):2984–92 |
Mol Biol Cell | 2014 |
Perini ED, Schaefer R, Stöter M, Kalaidzidis Y, Zerial M Mammalian CORVET is required for fusion and conversion of distinct early endosome subpopulations. Traffic. 2014 Dec;15(12):1366–89 |
Traffic | 2014 |
Rodenfels J, Lavrynenko O, Ayciriex S, Sampaio JL, Carvalho M, Shevchenko A, Eaton S Production of systemically circulating Hedgehog by the intestine couples nutrition to growth and development. Genes Dev. 2014 Dec 1;28(23):2636–51 |
Genes Dev | 2014 |
Weber M, Mickoleit M, Huisken J Light sheet microscopy. Methods Cell Biol. 2014;123:193–215 |
Methods Cell Biol | 2014 |
Planas-Paz L, Lammert E Mechanosensing in developing lymphatic vessels. Adv Anat Embryol Cell Biol. 2014;214:23–40 |
Adv Anat Embryol Cell Bio | 2014 |
Bieberstein NI, Straube K, Neugebauer KM Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing. Methods Mol Biol. 2014;1126:315–23 |
Methods Mol Biol | 2014 |
Schmied C, Stamataki E, Tomancak P Open-source solutions for SPIMage processing. Methods Cell Biol. 2014;123:505–29 |
Methods Cell Biol | 2014 |
Gurudev N, Florek M, Corbeil D, Knust E Prominent role of prominin in the retina. Adv Exp Med Biol. 2013;777:55–71 |
Adv Exp Med Biol | 2013 |
Machyna M, Heyn P, Neugebauer KM Cajal bodies: where form meets function. Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):17–34 |
Wiley Interdiscip Rev RNA | 2013 |
Kragl M, Roensch K, Nüsslein I, Tazaki A, Taniguchi Y, Tarui H, Hayashi T, Agata K, Tanaka EM Muscle and connective tissue progenitor populations show distinct Twist1 and Twist3 expression profiles during axolotl limb regeneration. Dev Biol. 2013 Jan 1;373(1):196–204 |
Dev Biol | 2013 |
Kalinina I, Nandi A, Delivani P, Chacón MR, Klemm AH, Ramunno-Johnson D, Krull A, Lindner B, Pavin N, Tolić-Nørrelykke IM Pivoting of microtubules around the spindle pole accelerates kinetochore capture. Nat Cell Biol. 2013 Jan;15(1):82–7 |
Nat Cell Biol | 2013 |
Karimova M, Abi-Ghanem J, Berger N, Surendranath V, Pisabarro MT, Buchholz F Vika/vox, a novel efficient and specific Cre/loxP-like site-specific recombination system. Nucleic Acids Res. 2013 Jan;41(2):e37 |
Nucleic Acids Res | 2013 |
Nacu E, Glausch M, Le HQ, Damanik FF, Schuez M, Knapp D, Khattak S, Richter T, Tanaka EM Connective tissue cells, but not muscle cells, are involved in establishing the proximo-distal outcome of limb regeneration in the axolotl. Development. 2013 Feb 1;140(3):513–8 |
Development | 2013 |
Stevanovic A, Thiele C Monotopic topology is required for lipid droplet targeting of ancient ubiquitous protein 1. J Lipid Res. 2013 Feb;54(2):503–13 |
J Lipid Res | 2013 |
Rostovskaya M, Naumann R, Fu J, Obst M, Mueller D, Stewart AF, Anastassiadis K Transposon mediated BAC transgenesis via pronuclear injection of mouse zygotes. Genesis. 2013 Feb;51(2):135–41 |
Genesis | 2013 |
Firmino J, Tinevez JY, Knust E Crumbs affects protein dynamics in anterior regions of the developing Drosophila embryo. PLoS One. 2013;8(3):e58839 |
PLoS One | 2013 |
Palm W, Swierczynska MM, Kumari V, Ehrhart-Bornstein M, Bornstein SR, Eaton S Secretion and signaling activities of lipoprotein-associated hedgehog and non-sterol-modified hedgehog in flies and mammals. PLoS Biol. 2013 Mar;11(3):e1001505 |
PLoS Biol | 2013 |
Brugiolo M, Herzel L, Neugebauer KM Counting on co-transcriptional splicing. F1000Prime Rep. 2013 Apr 2;5:9 |
F1000Prime Rep | 2013 |
Coelho M, Maghelli N, Tolić-Nørrelykke IM Single-molecule imaging in vivo: the dancing building blocks of the cell. Integr Biol (Camb). 2013 Apr 29;5(5):748–58 |
Integr Biol | 2013 |
Gracida X, Eckmann CR Fertility and germline stem cell maintenance under different diets requires nhr-114/HNF4 in C. elegans. Curr Biol. 2013 Apr 8;23(7):607–13 |
Curr Biol | 2013 |
Grotek B, Wehner D, Weidinger G Notch signaling coordinates cellular proliferation with differentiation during zebrafish fin regeneration. Development. 2013 Apr;140(7):1412–23 |
Development | 2013 |
Planas-Paz L, Lammert E Mechanical forces in lymphatic vascular development and disease. Cell Mol Life Sci. 2013 May 12 |
Cell Mol Life Sci | 2013 |
Malinovska L, Kroschwald S, Alberti S Protein disorder, prion propensities, and self-organizing macromolecular collectives. Biochim Biophys Acta. 2013 May;1834(5):918–31 |
Biochim Biophys Acta | 2013 |
Kappei D, Butter F, Benda C, Scheibe M, Draškovič I, Stevense M, Novo CL, Basquin C, Araki M, Araki K, Krastev DB, Kittler R, Jessberger R, Londoño-Vallejo JA, Mann M, Buchholz F HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment. EMBO J. 2013 May 17 |
EMBO J | 2013 |
Kelava I, Lewitus E, Huttner WB The secondary loss of gyrencephaly as an example of evolutionary phenotypical reversal. Front Neuroanat. 2013 Jun 26;7:16 |
Front Neuroanat | 2013 |
Chwastek G, Schwille P A monolayer assay tailored to investigate lipid-protein systems. Chemphyschem. 2013 Jun 24;14(9):1877–81 |
Chemphyschem | 2013 |
Özhan G, Sezgin E, Wehner D, Pfister AS, Kühl SJ, Kagermeier-Schenk B, Kühl M, Schwille P, Weidinger G Lypd6 enhances Wnt/β-catenin signaling by promoting Lrp6 phosphorylation in raft plasma membrane domains. Dev Cell. 2013 Aug 26;26(4):331–45 |
Dev Cell | 2013 |
Lavrynenko O, Nedielkov R, Möller HM, Shevchenko A Girard derivatization for LC-MS/MS profiling of endogenous ecdysteroids in Drosophila. J Lipid Res. 2013 Aug;54(8):2265–72 |
J Lipid Res | 2013 |
Ananthanarayanan V, Schattat M, Vogel SK, Krull A, Pavin N, Tolić-Nørrelykke IM Dynein motion switches from diffusive to directed upon cortical anchoring. Cell. 2013 Jun 20;153(7):1526–36 |
Cell | 2013 |
Clark AG, Dierkes K, Paluch EK Monitoring actin cortex thickness in live cells. Biophys J. 2013 Aug 6;105(3):570–80 |
Biophys J | 2013 |
Liu SY, Selck C, Friedrich B, Lutz R, Vila-Farré M, Dahl A, Brandl H, Lakshmanaperumal N, Henry I, Rink JC Reactivating head regrowth in a regeneration-deficient planarian species. Nature. 2013 Aug 1;500(7460):81–4 |
Nature | 2013 |
Trushko A, Schäffer E, Howard J The growth speed of microtubules with XMAP215-coated beads coupled to their ends is increased by tensile force. Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14670–5 |
Proc Natl Acad Sci U S A | 2013 |
Geyer VF, Jülicher F, Howard J, Friedrich BM Cell-body rocking is a dominant mechanism for flagellar synchronization in a swimming alga. Proc Natl Acad Sci U S A. 2013 Nov 5;110(45):18058–63 |
Proc Natl Acad Sci U S A | 2013 |
Biro M, Romeo Y, Kroschwald S, Bovellan M, Boden A, Tcherkezian J, Roux PP, Charras G, Paluch EK Cell cortex composition and homeostasis resolved by integrating proteomics and quantitative imaging. Cytoskeleton (Hoboken). 2013 Oct 17 |
Cytoskeleton | 2013 |
Coelho M, Dereli A, Haese A, Kühn S, Malinovska L, Desantis ME, Shorter J, Alberti S, Gross T, Tolić-Nørrelykke IM Fission Yeast Does Not Age under Favorable Conditions, but Does So after Stress. Curr Biol. 2013 Oct 7;23(19):1844–52 |
Curr Biol | 2013 |
Gupta M, Brand M Identification and Expression Analysis of Zebrafish Glypicans during Embryonic Development. PLoS One. 2013 Nov 14;8(11):e80824 |
PLoS One | 2013 |
Erkut C, Vasilj A, Boland S, Habermann B, Shevchenko A, Kurzchalia TV Molecular Strategies of the Caenorhabditis elegans Dauer Larva to Survive Extreme Desiccation. PLoS One. 2013 Dec 4;8(12):e82473 |
PLoS One | 2013 |
Gerl MJ, Sampaio JL, Urban S, Kalvodova L, Verbavatz JM, Binnington B, Lindemann D, Lingwood CA, Shevchenko A, Schroeder C, Simons K Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane. J Cell Biol. 2012 Jan 23;196(2):213–21 |
J Cell Biol | 2012 |
Ganz J, Kaslin J, Freudenreich D, Machate A, Geffarth M, Brand M Subdivisions of the adult zebrafish subpallium by molecular marker analysis. J Comp Neurol. 2012 Feb 15;520(3):633–55 |
J Comp Neurol | 2012 |
Chakraborty D, Kappei D, Theis M, Nitzsche A, Ding L, Paszkowski-Rogacz M, Surendranath V, Berger N, Schulz H, Saar K, Hubner N, Buchholz F Combined RNAi and localization for functionally dissecting long noncoding RNAs. Nat Methods. 2012 Feb 12;9(4):360–2 |
Nat Methods | 2012 |
Kelava I, Reillo I, Murayama AY, Kalinka AT, Stenzel D, Tomancak P, Matsuzaki F, Lebrand C, Sasaki E, Schwamborn JC, Okano H, Huttner WB, Borrell V Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus. Cereb Cortex. 2012 Feb;22(2):469–81 |
Cereb Cortex | 2012 |
Betaneli V, Petrov EP, Schwille P The role of lipids in VDAC oligomerization. Biophys J. 2012 Feb 8;102(3):523–31 |
Biophys J | 2012 |
Sezgin E, Levental I, Grzybek M, Schwarzmann G, Mueller V, Honigmann A, Belov VN, Eggeling C, Coskun U, Simons K, Schwille P Partitioning, diffusion, and ligand binding of raft lipid analogs in model and cellular plasma membranes. Biochim Biophys Acta. 2012 Mar 17;1818(7):1777–1784 |
Biochim Biophys Acta | 2012 |
Klose C, Surma MA, Gerl MJ, Meyenhofer F, Shevchenko A, Simons K Flexibility of a eukaryotic lipidome – insights from yeast lipidomics. PLoS One. 2012;7(4):e35063 |
PLoS One | 2012 |
Aliee M, Röper JC, Landsberg KP, Pentzold C, Widmann TJ, Jülicher F, Dahmann Physical mechanisms shaping the Drosophila dorsoventral compartment boundary. C. Curr Biol. 2012 May 2 |
Curr Biol | 2012 |
Winter JF, Höpfner S, Korn K, Farnung BO, Bradshaw CR, Marsico G, Volkmer M, Habermann B, Zerial M Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity. Nat Cell Biol. 2012 May 27 |
Nat Cell Biol | 2012 |
Sezgin E, Kaiser HJ, Baumgart T, Schwille P, Simons K, Levental I Elucidating membrane structure and protein behavior using giant plasma membrane vesicles. Nat Protoc. 2012 May 3;7(6):1042–51 |
Nat Protoc | 2012 |
Saalfeld S, Fetter R, Cardona A, Tomancak P Elastic volume reconstruction from series of ultra-thin microscopy sections. Nat Methods. 2012 Jun 10;9(7):717–20 |
Nat Methods | 2012 |
Weber M, Huisken J Omnidirectional microscopy. Nat Methods. 2012 Jun 28;9(7):656–7 |
Nat Methods | 2012 |
Palm W, Sampaio JL, Brankatschk M, Carvalho M, Mahmoud A, Shevchenko A, Eaton S Lipoproteins in Drosophila melanogaster--assembly, function, and influence on tissue lipid composition. PLoS Genet. 2012 Jul;8(7):e1002828 |
PLoS Genet | 2012 |
Schröter C, Ares S, Morelli LG, Isakova A, Hens K, Soroldoni D, Gajewski M, Jülicher F, Maerkl SJ, Deplancke B, Oates AC Topology and dynamics of the zebrafish segmentation clock core circuit. PLoS Biol. 2012 Jul;10(7):e1001364 |
PLoS Biol | 2012 |
Bormuth V, Nitzsche B, Ruhnow F, Mitra A, Storch M, Rammner B, Howard J, Diez S The highly processive kinesin-8, Kip3, switches microtubule protofilaments with a bias toward the left. Biophys J. 2012 Jul 3;103(1):L4–6 |
Biophys J | 2012 |
Vasilj A, Gentzel M, Ueberham E, Gebhardt R, Shevchenko A Tissue proteomics by one-dimensional gel electrophoresis combined with label-free protein quantification. J Proteome Res. 2012 Jul 6;11(7):3680–9 |
J Proteome Res | 2012 |
Fietz SA, Lachmann R, Brandl H, Kircher M, Samusik N, Schröder R, Lakshmanaperumal N, Henry I, Vogt J, Riehn A, Distler W, Nitsch R, Enard W, Pääbo S, Huttner WB Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11836–41 |
Proc Natl Acad Sci U S A | 2012 |
Bieberstein NI, Oesterreich FC, Straube K, Neugebauer KM First exon length controls active chromatin signatures and transcription. Cell Rep. 2012 Jul 26;2(1):62–8 |
Cell Rep | 2012 |
Carvalho M, Sampaio JL, Palm W, Brankatschk M, Eaton S, Shevchenko A Effects of diet and development on the Drosophila lipidome. Mol Syst Biol. 2012 Jul 31;8:600 |
Mol Syst Bio | 2012 |
Malinovska L, Kroschwald S, Munder MC, Richter D, Alberti S Molecular chaperones and stress-inducible protein-sorting factors coordinate the spatiotemporal distribution of protein aggregates. Mol Biol Cell. 2012 Aug;23(16):3041–56 |
Mol Biol Cell | 2012 |
Surma MA, Klose C, Simons K Lipid-dependent protein sorting at the trans-Golgi network. Biochim Biophys Acta. 2012 Aug;1821(8):1059–67 |
Biochim Biophys Acta | 2012 |
Sezgin E, Schwille P Model membrane platforms to study protein-membrane interactions. Mol Membr Biol. 2012 Aug;29(5):144–54 |
Mol Membr Biol | 2012 |
Arumugam S, Chwastek G, Fischer-Friedrich E, Ehrig C, Mönch I, Schwille P Surface Topology Engineering of Membranes for the Mechanical Investigation of the Tubulin Homologue FtsZ. Angew Chem Int Ed Engl. 2012 Aug 31 |
Angew Chem Int Ed Engl | 2012 |
Kaufmann A, Mickoleit M, Weber M, Huisken J Multilayer mounting enables long-term imaging of zebrafish development in a light sheet microscope. Development. 2012 Sep;139(17):3242–7 |
Development | 2012 |
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Meder D, Moreno MJ, Verkade P, Vaz WL, Simons K Phase coexistence and connectivity in the apical membrane of polarized epithelial cells. Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):329–34. Epub 2006 Jan 3 |
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Sobkow L, Epperlein HH, Herklotz S, Straube WL, Tanaka EM A germline GFP transgenic axolotl and its use to track cell fate: dual origin of the fin mesenchyme during development and the fate of blood cells during regeneration. Dev Biol. 2006 Feb 15;290(2):386–97. Epub 2006 Jan 4 |
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Baust T, Czupalla C, Krause E, Bourel-Bonnet L, Hoflack B Proteomic analysis of adaptor protein 1A coats selectively assembled on liposomes. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3159–64. Epub 2006 Feb 21 |
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Schuck S, Simons K Controversy fuels trafficking of GPI-anchored proteins. J Cell Biol. 2006 Mar 27;172(7):963–5 |
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Ejsing CS, Moehring T, Bahr U, Duchoslav E, Karas M, Simons K, Shevchenko A Collision-induced dissociation pathways of yeast sphingolipids and their molecular profiling in total lipid extracts: a study by quadrupole TOF and linear ion trap-orbitrap mass spectrometry. J Mass Spectrom. 2006 Mar;41(3):372–89 |
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Kedrov A, Müller DJ Characterizing folding, structure, molecular interactions and ligand gated activation of single sodium/proton antiporters. Naunyn Schmiedebergs Arch Pharmacol. 2006 Mar;372(6):400–12. Epub 2006 Mar 17. Review |
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Ohrt T, Merkle D, Birkenfeld K, Echeverri CJ, Schwille P In situ fluorescence analysis demonstrates active siRNA exclusion from the nucleus by Exportin 5. Nucleic Acids Res. 2006 Mar 6;34(5):1369–80. Print 2006 |
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Langenberg T, Dracz T, Oates AC, Heisenberg CP, Brand M Analysis and visualization of cell movement in the developing zebrafish brain. Dev Dyn. 2006 Apr;235(4):928–33 |
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Glaser S, Schaft J, Lubitz S, Vintersten K, van der Hoeven F, Tufteland KR, Aasland R, Anastassiadis K, Ang SL, Stewart AF Multiple epigenetic maintenance factors implicated by the loss of Mll2 in mouse development. Development. 2006 Apr;133(8):1423–32. Epub 2006 Mar 15 |
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Cisneros DA, Muller DJ, Daud SM, Lakey JH An approach to prepare membrane proteins for single-molecule imaging. Angew Chem Int Ed Engl. 2006 May 12;45(20):3252–6. No abstract available |
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Cunha AC, Weigle B, Kiessling A, Bachmann M, Rieber EP Tissue-specificity of prostate specific antigens: comparative analysis of transcript levels in prostate and non-prostatic tissues. Cancer Lett. 2006 May 18;236(2):229–38. Epub 2005 Jul 19 |
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Trajkovski M, Mziaut H, Schwarz PE, Solimena M Genes of type 2 diabetes in beta cells. Endocrinol Metab Clin North Am. 2006 Jun;35(2):357–69, x. Review |
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Benenati G, Penkov S, Müller-Reichert T, Entchev EV, Kurzchalia TV Two cytochrome P450s in Caenorhabditis elegans are essential for the organization of eggshell, correct execution of meiosis and the polarization of embryo. Mech Dev. 2009 May-Jun;126(5–6):382–93. Epub 2009 Feb 11 |
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Erler A, Maresca M, Fu J, Stewart AF Recombineering reagents for improved inducible expression and selection marker re-use in Schizosaccharomyces pombe. Yeast. 2006 Aug;23(11):813–23 |
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Meder D, Simons K Cell biology. Ras on the roundabout. Science. 2005 Mar 18;307(5716):1731–3. No abstract available |
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Shen J, Dahmann C Extrusion of cells with inappropriate Dpp signaling from Drosophila wing disc epithelia. Science. 2005 Mar 18;307(5716):1789–90 |
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Kittler R, Buchholz F Functional genomic analysis of cell division by endoribonuclease-prepared siRNAs. Cell Cycle. 2005 Apr;4(4):564–7. Epub 2005 Apr 19. Review |
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Khalimonchuk O, Ostermann K, Rödel G Evidence for the association of yeast mitochondrial ribosomes with Cox11p, a protein required for the Cu(B) site formation of cytochrome c oxidase. Curr Genet. 2005 Apr;47(4):223–33. Epub 2005 Mar 18 |
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Kedrov A, Krieg M, Ziegler C, Kuhlbrandt W, Muller DJ Locating ligand binding and activation of a single antiporter. EMBO Rep. 2005 Jul;6(7):668–74 |
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Ulrich F, Krieg M, Schötz EM, Link V, Castanon I, Schnabel V, Taubenberger A, Mueller D, Puech PH, Heisenberg CP Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin. Dev Cell. 2005 Oct;9(4):555–64 |
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Kittler R, Heninger AK, Franke K, Habermann B, Buchholz F Production of endoribonuclease-prepared short interfering RNAs for gene silencing in mammalian cells. Nat Methods. 2005 Oct;2(10):779–84. No abstract available |
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Glaser S, Anastassiadis K, Stewart AF Current issues in mouse genome engineering. Nat Genet. 2005 Nov;37(11):1187–93. Review |
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Khalimonchuk O, Rödel G Biogenesis of cytochrome c oxidase. Mitochondrion. 2005 Dec;5(6):363–88. Epub 2005 Sep 29. Review |
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Mol Cell Proteomics | 2004 |
Proszynski TJ, Simons K, Bagnat M O-glycosylation as a sorting determinant for cell surface delivery in yeast. Mol Biol Cell. 2004 Apr;15(4):1533–43. Epub 2004 Jan 23 |
Mol Biol Cell | 2004 |
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Mol Cell Biol | 2004 |
Schuck S, Manninen A, Honsho M, Füllekrug J, Simons K Generation of single and double knockdowns in polarized epithelial cells by retrovirus-mediated RNA interference. Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4912–7. Epub 2004 Mar 29 |
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Straube WL, Brockes JP, Drechsel DN, Tanaka EM Plasticity and reprogramming of differentiated cells in amphibian regeneration: partial purification of a serum factor that triggers cell cycle re-entry in differentiated muscle cells. Cloning Stem Cells. 2004;6(4):333–44 |
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Kedrov A, Ziegler C, Janovjak H, Kühlbrandt W, Müller DJ Controlled unfolding and refolding of a single sodium-proton antiporter using atomic force microscopy. J Mol Biol. 2004 Jul 23;340(5):1143–52 |
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Dudu V, Pantazis P, González-Gaitán M Membrane traffic during embryonic development: epithelial formation, cell fate decisions and differentiation. Curr Opin Cell Biol. 2004 Aug;16(4):407–14. Review |
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Khattak S, Darai G, Rösen-Wolff A Puumala virus nucleocapsid protein expressed in transgenic plants is not immunogenic after oral administration. Virus Genes. 2004 Aug;29(1):109–16 |
Virus Genes | 2004 |
Liska AJ, Shevchenko A, Pick U, Katz A Enhanced photosynthesis and redox energy production contribute to salinity tolerance in Dunaliella as revealed by homology-based proteomics. Plant Physiol. 2004 Sep;136(1):2806–17. Epub 2004 Aug 27 |
Plant Physiol | 2004 |
Liska AJ, Popov AV, Sunyaev S, Coughlin P, Habermann B, Shevchenko A, Bork P, Karsenti E, Shevchenko A Homology-based functional proteomics by mass spectrometry: application to the Xenopus microtubule-associated proteome. Proteomics. 2004 Sep;4(9):2707–21 |
Proteomics | 2004 |
Konstantinova I, Lammert E Microvascular development: learning from pancreatic islets. Bioessays. 2004 Oct;26(10):1069–75. Review |
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Trajkovski M, Mziaut H, Altkrüger A, Ouwendijk J, Knoch KP, Müller S, Solimena M Nuclear translocation of an ICA512 cytosolic fragment couples granule exocytosis and insulin expression in {beta}-cells. J Cell Biol. 2004 Dec 20;167(6):1063–74. Epub 2004 Dec 13 |
J Cell Biol | 2004 |
Schuck S, Simons K Polarized sorting in epithelial cells: raft clustering and the biogenesis of the apical membrane. J Cell Sci. 2004 Dec 1;117(Pt 25):5955–64. Review |
J Cell Sci | 2004 |
Kittler R, Putz G, Pelletier L, Poser I, Heninger AK, Drechsel D, Fischer S, Konstantinova I, Habermann B, Grabner H, Yaspo ML, Himmelbauer H, Korn B, Neugebauer K, Pisabarro MT, Buchholz F An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division. Nature. 2004 Dec 23;432(7020):1036–40. PMID: 15616564 [PubMed – indexed for MEDLINE] |
Nature | 2004 |
Liska AJ, Shevchenko A Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications. Proteomics. 2003 Jan;3(1):19–28. Review |
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Roguev A, Schaft D, Shevchenko A, Aasland R, Shevchenko A, Stewart AF High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. J Biol Chem. 2003 Mar 7;278(10):8487–93. Epub 2002 Dec 17 |
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van Breugel M, Drechsel D, Hyman A Stu2p, the budding yeast member of the conserved Dis1/XMAP215 family of microtubule-associated proteins is a plus end-binding microtubule destabilizer. J Cell Biol. 2003 Apr 28;161(2):359–69 |
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Siekmann AF, Brand M Distinct tissue-specificity of three zebrafish ext1 genes encoding proteoglycan modifying enzymes and their relationship to somitic Sonic hedgehog signaling. Dev Dyn. 2005 Feb;232(2):498–505 |
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Schuck S, Honsho M, Ekroos K, Shevchenko A, Simons K Resistance of cell membranes to different detergents. Proc Natl Acad Sci U S A. 2003 May 13;100(10):5795–800. Epub 2003 Apr 29 |
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Kotovic KM, Lockshon D, Boric L, Neugebauer KM Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast. Mol Cell Biol. 2003 Aug;23(16):5768–79 |
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Kittler R, Buchholz F RNA interference: gene silencing in the fast lane. Semin Cancer Biol. 2003 Aug;13(4):259–65. Review |
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Nikolova G, Lammert E Interdependent development of blood vessels and organs. Cell Tissue Res. 2003 Oct;314(1):33–42. Epub 2003 Aug 1. Review |
Cell Tissue Res | 2003 |
Langenberg T, Brand M, Cooper MS Imaging brain development and organogenesis in zebrafish using immobilized embryonic explants. Dev Dyn. 2003 Nov;228(3):464–74 |
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Ulrich F, Concha ML, Heid PJ, Voss E, Witzel S, Roehl H, Tada M, Wilson SW, Adams RJ, Soll DR, Heisenberg CP Slb/Wnt11 controls hypoblast cell migration and morphogenesis at the onset of zebrafish gastrulation. Development. 2003 Nov;130(22):5375–84. Epub 2003 Sep 16 |
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Balana B, Dobrev D, Wettwer E, Christ T, Knaut M, Ravens U Decreased ATP-sensitive K(+) current density during chronic human atrial fibrillation. J Mol Cell Cardiol. 2003 Dec;35(12):1399–405 |
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Roguev A, Schaft D, Shevchenko A, Pijnappel WW, Wilm M, Aasland R, Stewart AF The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4. EMBO J. 2001 Dec 17;20(24):7137–48 |
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