Publications

Our PhD students have published great scientific stories resulting from their discoveries. View below a selection of top first-author publications resulting from their time in the IMPRS-CellDevoSys, or search the publication database on our main Max Planck Institute webpage.

Title	Journal	Publication year
Turrero García M, Chang Y, Arai Y, Huttner WB S-phase duration is the main target of cell cycle regulation in neural progenitors of developing ferret neocortex. J Comp Neurol. 2016 Feb 15;524(3):456–70	J Comp Neurol	2016
Stapel LC, Lombardot B, Broaddus C, Kainmueller D, Jug F, Myers EW, Vastenhouw NL Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos. Development. 2016 Feb 1;143(3):540–6	Development	2016
Naganathan SR, Middelkoop TC, Fürthauer S, Grill SW Actomyosin-driven left-right asymmetry: from molecular torques to chiral self organization. Curr Opin Cell Biol. 2016 Feb;38:24–30	Curr Opin Cell Biol	2016
Lisica A, Engel C, Jahnel M, Roldán É, Galburt EA, Cramer P, Grill SW Mechanisms of backtrack recovery by RNA polymerases I and II. Proc Natl Acad Sci U S A. 2016 Feb 29. pii: 201517011	Proc Natl Acad Sci U S A	2016
Millonigg S, Minasaki R, Nousch M, Novak J, Eckmann CR Correction: GLD-4-Mediated Translational Activation Regulates the Size of the Proliferative Germ Cell Pool in the Adult C. elegans Germ Line. PLoS Genet. 2016 Feb 9;12(2):e1005862	PLoS Genet	2016
Schürmann M, Scholze J, Müller P, Guck J, Chan CJ Cell nuclei have lower refractive index and mass density than cytoplasm. J Biophotonics. 2016 Mar 24	J Biophotonics	2016
Munder MC, Midtvedt D, Franzmann T, Nüske E, Otto O, Herbig M, Ulbricht E, Müller P, Taubenberger A, Maharana S, Malinovska L, Richter D, Guck J, Zaburdaev V, Alberti S A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy. Elife. 2016 Mar 22;5. pii: e09347	Elife	2016
Afshar Y, Sbalzarini IF A Parallel Distributed-Memory Particle Method Enables Acquisition-Rate Segmentation of Large Fluorescence Microscopy Images. PLoS One. 2016 Apr 5;11(4):e0152528	PLoS One	2016
Geyer VF, Sartori P, Friedrich BM, Jülicher F, Howard J Independent Control of the Static and Dynamic Components of the Chlamydomonas Flagellar Beat. Curr Biol. 2016 Apr 25;26(8):1098–103	Curr Biol	2016
Villaseñor R, Kalaidzidis Y, Zerial M Signal processing by the endosomal system. Curr Opin Cell Biol. 2016 Apr;39:53–60	Curr Opin Cell Biol	2016
Erkut C, Gade VR, Laxman S, Kurzchalia TV The glyoxylate shunt is essential for desiccation tolerance in C. elegans and budding yeast. Elife. 2016 Apr 19;5. pii: e13614	Elife	2016
Stepanek L, Pigino G Microtubule doublets are double-track railways for intraflagellar transport trains. Science. 2016 May 6;352(6286):721–4	Science	2016
Ananthanarayanan V, Tolić IM Single-molecule imaging of cytoplasmic dynein in vivo. Methods Cell Biol. 2015;125:1–12	Methods Cell Biol	2015
Strzyz PJ, Lee HO, Sidhaye J, Weber IP, Leung LC, Norden C Interkinetic nuclear migration is centrosome independent and ensures apical cell division to maintain tissue integrity. Dev Cell. 2015 Jan 26;32(2):203–19	Dev Cell	2015
Decker F, Brugués J Dissecting microtubule structures by laser ablation. Methods Cell Biol. 2015;125:61–75	Methods Cell Biol	2015
Villaseñor R, Nonaka H, Del Conte-Zerial P, Kalaidzidis Y, Zerial M Regulation of EGFR signal transduction by analogue-to-digital conversion in endosomes. Elife. 2015 Feb 4;4	Elife	2015
Florio M, Albert M, Taverna E, Namba T, Brandl H, Lewitus E, Haffner C, Sykes A, Wong FK, Peters J, Guhr E, Klemroth S, Prüfer K, Kelso J, Naumann R, Nüsslein I, Dahl A, Lachmann R, Pääbo S, Huttner WB Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion. Science. 2015 Feb 26. pii: aaa1975	Science	2015
Heyn P, Kalinka AT, Tomancak P, Neugebauer KM Introns and gene expression: Cellular constraints, transcriptional regulation, and evolutionary consequences. Bioessays. 2015 Feb;37(2):148–54	Bioessays	2015
Begasse ML, Leaver M, Vazquez F, Grill SW, Hyman AA Temperature Dependence of Cell Division Timing Accounts for a Shift in the Thermal Limits of C. elegans and C. briggsae. Cell Rep. 2015 Feb 4. pii: S2211–1247(15)00007–8	Cell Rep	2015
Khaliullina H, Bilgin M, Sampaio JL, Shevchenko A, Eaton S Endocannabinoids are conserved inhibitors of the Hedgehog pathway. Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3415–20	Proc Natl Acad Sci U S A	2015
Bergert M, Erzberger A, Desai RA, Aspalter IM, Oates AC, Charras G, Salbreux G, Paluch EK Force transmission during adhesion-independent migration. Nat Cell Biol. 2015 Apr;17(4):524–9	Nat Cell Biol	2015
Turrero García M, Chang Y, Arai Y, Huttner WB S-phase duration is the main target of cell cycle regulation in neural progenitors of developing ferret neocortex. J Comp Neurol. 2015 May 10	J Comp Neurol	2015
Dunst S, Kazimiers T, von Zadow F, Jambor H, Sagner A, Brankatschk B, Mahmoud A, Spannl S, Tomancak P, Eaton S, Brankatschk M Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila. Dev Cell. 2015 May 4;33(3):351–65	Dev Cell	2015
Malinovska L, Palm S, Gibson K, Verbavatz JM, Alberti S Dictyostelium discoideum has a highly Q/N-rich proteome and shows an unusual resilience to protein aggregation. Proc Natl Acad Sci U S A. 2015 May 19;112(20):E2620–9	Proc Natl Acad Sci U S A	2015
Machyna M, Neugebauer KM, Staněk D Coilin: The first 25 years. RNA Biol. 2015;12(6):590–6	RNA Biol	2015
Kumichel A, Kapp K, Knust E A Conserved Di-Basic Motif of Drosophila Crumbs Contributes to Efficient ER Export. Traffic. 2015 Jun;16(6):604–16	Traffic	2015
Coelho M, Tolić IM Asymmetric damage segregation at cell division via protein aggregate fusion and attachment to organelles. Bioessays. 2015 Jul;37(7):740–7	Bioessays	2015
Kroschwald S, Maharana S, Mateju D, Malinovska L, Nüske E, Poser I, Richter D, Alberti S Promiscuous interactions and protein disaggregases determine the material state of stress-inducible RNP granules. Elife. 2015 Aug 4;4:e06807	Elife	2015
Wong FK, Fei JF, Mora-Bermúdez F, Taverna E, Haffner C, Fu J, Anastassiadis K, Stewart AF, Huttner WB Sustained Pax6 Expression Generates Primate-like Basal Radial Glia in Developing Mouse Neocortex. PLoS Biol. 2015 Aug 7;13(8):e1002217	PLoS Biol	2015
Erkut C, Kurzchalia TV The C. elegans dauer larva as a paradigm to study metabolic suppression and desiccation tolerance. Planta. 2015 Aug;242(2):389–96	Planta	2015
Herzel L, Neugebauer KM Quantification of co-transcriptional splicing from RNA-Seq data. Methods. 2015 Sep 1;85:36–43	Methods	2015
Jahr W, Schmid B, Schmied C, Fahrbach FO, Huisken J Hyperspectral light sheet microscopy. Nat Commun. 2015 Sep 2;6:7990	Nat Commun	2015
Malinovska L, Alberti S Protein misfolding in Dictyostelium: using a freak of nature to gain insight into a universal problem. Prion. 2015 Nov 3:0	Prion	2015
Lavrynenko O, Rodenfels J, Carvalho M, Dye NA, Lafont R, Eaton S, Shevchenko A The ecdysteroidome of Drosophila: influence of diet and development. Development. 2015 Nov 1;142(21):3758–68	Development	2015
Hibbel A, Bogdanova A, Mahamdeh M, Jannasch A, Storch M, Schäffer E, Liakopoulos D, Howard J Kinesin Kip2 enhances microtubule growth in vitro through length-dependent feedback on polymerization and catastrophe. Elife. 2015 Nov 18;4. pii: e10542	Elife	2015
Schmied C, Steinbach P, Pietzsch T, Preibisch S, Tomancak P An automated workflow for parallel processing of large multiview SPIM recordings. Bioinformatics. 2015 Dec 1. pii: btv706	Bioinformatics	2015
Weber M, Huisken J In vivo imaging of cardiac development and function in zebrafish using light sheet microscopy. Swiss Med Wkly. 2015 Dec 23;145:w14227	Swiss Med Wkly	2015
Lin YH, Currinn H, Pocha SM, Rothnie A, Wassmer T, Knust E AP-2-complex-mediated endocytosis of Drosophila Crumbs regulates polarity by antagonizing Stardust. J Cell Sci. 2015 Dec 15;128(24):4538–49	J Cell Sci	2015
Morales-Navarrete H, Segovia-Miranda F, Klukowski P, Meyer K, Nonaka H, Marsico G, Chernykh M, Kalaidzidis A, Zerial M, Kalaidzidis Y A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture. Elife. 2015 Dec 27;4. pii: e11214	Elife	2015
Luz M, Spannl-Müller S, Ozhan G, Kagermeier-Schenk B, Rhinn M, Weidinger G, Brand M Dynamic Association with Donor Cell Filopodia and Lipid-Modification Are Essential Features of Wnt8a during Patterning of the Zebrafish Neuroectoderm. PLoS One. 2014 Jan 10;9(1):e84922	PLoS One	2014
Heyn P, Kircher M, Dahl A, Kelso J, Tomancak P, Kalinka AT, Neugebauer KM The earliest transcribed zygotic genes are short, newly evolved, and different across species. Cell Rep. 2014 Jan 30;6(2):285–92	Cell Rep	2014
Weber M, Mickoleit M, Huisken J Multilayer mounting for long-term light sheet microscopy of zebrafish. J Vis Exp. 2014 Feb 27;(84):e51119	J Vis Exp	2014
Stapel LC, Vastenhouw NL Message control in developmental transitions; deciphering chromatin's role using zebrafish genomics. Brief Funct Genomics. 2014 Mar;13(2):106–20	Brief Funct Genomics	2014
Kumichel A, Knust E Apical localisation of crumbs in the boundary cells of the Drosophila hindgut is independent of its canonical interaction partner stardust. PLoS One. 2014 Apr 7;9(4):e94038	PLoS One	2014
Gurudev N, Yuan M, Knust E Chaoptin, prominin, eyes shut and crumbs form a genetic network controlling the apical compartment of Drosophila photoreceptor cells. Biol Open. 2014 Apr 4;3(5):332–41	Biol Open	2014
Weber IP, Ramos AP, Strzyz PJ, Leung LC, Young S, Norden C Mitotic position and morphology of committed precursor cells in the zebrafish retina adapt to architectural changes upon tissue maturation. Cell Rep. 2014 Apr 24;7(2):386–97	Cell Rep	2014
Wong FK, Haffner C, Huttner WB, Taverna E Microinjection of membrane-impermeable molecules into single neural stem cells in brain tissue. Nat Protoc. 2014 May;9(5):1170–82	Nat Protoc	2014
Clark AG, Wartlick O, Salbreux G, Paluch EK Stresses at the cell surface during animal cell morphogenesis. Curr Biol. 2014 May 19;24(10):R484–94	Curr Biol	2014
Swierczynska MM, Mateska I, Peitzsch M2, Bornstein SR, Chavakis T, Eisenhofer G, Lamounier-Zepter V, Eaton S Changes in morphology and function of adrenal cortex in mice fed a high-fat diet. Int J Obes (Lond). 2014 Jun 12	Int J Obes (Lond)	2014
Florio M, Huttner WB Neural progenitors, neurogenesis and the evolution of the neocortex. Development. 2014 Jun;141(11):2182–94	Development	2014
Coelho M, Lade SJ, Alberti S, Gross T, Tolić IM Fusion of protein aggregates facilitates asymmetric damage segregation. PLoS Biol. 2014 Jun 17;12(6):e1001886	PLoS Biol	2014
Mickoleit M, Schmid B, Weber M, Fahrbach FO, Hombach S, Reischauer S, Huisken J High-resolution reconstruction of the beating zebrafish heart. Nat Methods. 2014 Sep;11(9):919–22	Nat Methods	2014
Millonigg S, Minasaki R, Nousch M, Eckmann CR GLD-4-mediated translational activation regulates the size of the proliferative germ cell pool in the adult C. elegans germ line. PLoS Genet. 2014 Sep 25;10(9):e1004647	PLoS Genet	2014
Podolski M, Mahamdeh M, Howard J Stu2, the budding yeast XMAP215/Dis1 homolog, promotes assembly of yeast microtubules by increasing growth rate and decreasing catastrophe frequency. J Biol Chem. 2014 Oct 10;289(41):28087–93	J Biol Chem	2014
Wueseke O, Bunkenborg J, Hein MY, Zinke A, Viscardi V, Woodruff JB, Oegema K, Mann M, Andersen JS, Hyman AA The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix. Mol Biol Cell. 2014 Oct 1;25(19):2984–92	Mol Biol Cell	2014
Perini ED, Schaefer R, Stöter M, Kalaidzidis Y, Zerial M Mammalian CORVET is required for fusion and conversion of distinct early endosome subpopulations. Traffic. 2014 Dec;15(12):1366–89	Traffic	2014
Rodenfels J, Lavrynenko O, Ayciriex S, Sampaio JL, Carvalho M, Shevchenko A, Eaton S Production of systemically circulating Hedgehog by the intestine couples nutrition to growth and development. Genes Dev. 2014 Dec 1;28(23):2636–51	Genes Dev	2014
Weber M, Mickoleit M, Huisken J Light sheet microscopy. Methods Cell Biol. 2014;123:193–215	Methods Cell Biol	2014
Planas-Paz L, Lammert E Mechanosensing in developing lymphatic vessels. Adv Anat Embryol Cell Biol. 2014;214:23–40	Adv Anat Embryol Cell Bio	2014
Bieberstein NI, Straube K, Neugebauer KM Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing. Methods Mol Biol. 2014;1126:315–23	Methods Mol Biol	2014
Schmied C, Stamataki E, Tomancak P Open-source solutions for SPIMage processing. Methods Cell Biol. 2014;123:505–29	Methods Cell Biol	2014
Gurudev N, Florek M, Corbeil D, Knust E Prominent role of prominin in the retina. Adv Exp Med Biol. 2013;777:55–71	Adv Exp Med Biol	2013
Machyna M, Heyn P, Neugebauer KM Cajal bodies: where form meets function. Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):17–34	Wiley Interdiscip Rev RNA	2013
Kragl M, Roensch K, Nüsslein I, Tazaki A, Taniguchi Y, Tarui H, Hayashi T, Agata K, Tanaka EM Muscle and connective tissue progenitor populations show distinct Twist1 and Twist3 expression profiles during axolotl limb regeneration. Dev Biol. 2013 Jan 1;373(1):196–204	Dev Biol	2013
Kalinina I, Nandi A, Delivani P, Chacón MR, Klemm AH, Ramunno-Johnson D, Krull A, Lindner B, Pavin N, Tolić-Nørrelykke IM Pivoting of microtubules around the spindle pole accelerates kinetochore capture. Nat Cell Biol. 2013 Jan;15(1):82–7	Nat Cell Biol	2013
Karimova M, Abi-Ghanem J, Berger N, Surendranath V, Pisabarro MT, Buchholz F Vika/vox, a novel efficient and specific Cre/loxP-like site-specific recombination system. Nucleic Acids Res. 2013 Jan;41(2):e37	Nucleic Acids Res	2013
Nacu E, Glausch M, Le HQ, Damanik FF, Schuez M, Knapp D, Khattak S, Richter T, Tanaka EM Connective tissue cells, but not muscle cells, are involved in establishing the proximo-distal outcome of limb regeneration in the axolotl. Development. 2013 Feb 1;140(3):513–8	Development	2013
Stevanovic A, Thiele C Monotopic topology is required for lipid droplet targeting of ancient ubiquitous protein 1. J Lipid Res. 2013 Feb;54(2):503–13	J Lipid Res	2013
Rostovskaya M, Naumann R, Fu J, Obst M, Mueller D, Stewart AF, Anastassiadis K Transposon mediated BAC transgenesis via pronuclear injection of mouse zygotes. Genesis. 2013 Feb;51(2):135–41	Genesis	2013
Firmino J, Tinevez JY, Knust E Crumbs affects protein dynamics in anterior regions of the developing Drosophila embryo. PLoS One. 2013;8(3):e58839	PLoS One	2013
Palm W, Swierczynska MM, Kumari V, Ehrhart-Bornstein M, Bornstein SR, Eaton S Secretion and signaling activities of lipoprotein-associated hedgehog and non-sterol-modified hedgehog in flies and mammals. PLoS Biol. 2013 Mar;11(3):e1001505	PLoS Biol	2013
Brugiolo M, Herzel L, Neugebauer KM Counting on co-transcriptional splicing. F1000Prime Rep. 2013 Apr 2;5:9	F1000Prime Rep	2013
Coelho M, Maghelli N, Tolić-Nørrelykke IM Single-molecule imaging in vivo: the dancing building blocks of the cell. Integr Biol (Camb). 2013 Apr 29;5(5):748–58	Integr Biol	2013
Gracida X, Eckmann CR Fertility and germline stem cell maintenance under different diets requires nhr-114/HNF4 in C. elegans. Curr Biol. 2013 Apr 8;23(7):607–13	Curr Biol	2013
Grotek B, Wehner D, Weidinger G Notch signaling coordinates cellular proliferation with differentiation during zebrafish fin regeneration. Development. 2013 Apr;140(7):1412–23	Development	2013
Planas-Paz L, Lammert E Mechanical forces in lymphatic vascular development and disease. Cell Mol Life Sci. 2013 May 12	Cell Mol Life Sci	2013
Malinovska L, Kroschwald S, Alberti S Protein disorder, prion propensities, and self-organizing macromolecular collectives. Biochim Biophys Acta. 2013 May;1834(5):918–31	Biochim Biophys Acta	2013
Kappei D, Butter F, Benda C, Scheibe M, Draškovič I, Stevense M, Novo CL, Basquin C, Araki M, Araki K, Krastev DB, Kittler R, Jessberger R, Londoño-Vallejo JA, Mann M, Buchholz F HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment. EMBO J. 2013 May 17	EMBO J	2013
Kelava I, Lewitus E, Huttner WB The secondary loss of gyrencephaly as an example of evolutionary phenotypical reversal. Front Neuroanat. 2013 Jun 26;7:16	Front Neuroanat	2013
Chwastek G, Schwille P A monolayer assay tailored to investigate lipid-protein systems. Chemphyschem. 2013 Jun 24;14(9):1877–81	Chemphyschem	2013
Özhan G, Sezgin E, Wehner D, Pfister AS, Kühl SJ, Kagermeier-Schenk B, Kühl M, Schwille P, Weidinger G Lypd6 enhances Wnt/β-catenin signaling by promoting Lrp6 phosphorylation in raft plasma membrane domains. Dev Cell. 2013 Aug 26;26(4):331–45	Dev Cell	2013
Lavrynenko O, Nedielkov R, Möller HM, Shevchenko A Girard derivatization for LC-MS/MS profiling of endogenous ecdysteroids in Drosophila. J Lipid Res. 2013 Aug;54(8):2265–72	J Lipid Res	2013
Ananthanarayanan V, Schattat M, Vogel SK, Krull A, Pavin N, Tolić-Nørrelykke IM Dynein motion switches from diffusive to directed upon cortical anchoring. Cell. 2013 Jun 20;153(7):1526–36	Cell	2013
Clark AG, Dierkes K, Paluch EK Monitoring actin cortex thickness in live cells. Biophys J. 2013 Aug 6;105(3):570–80	Biophys J	2013
Liu SY, Selck C, Friedrich B, Lutz R, Vila-Farré M, Dahl A, Brandl H, Lakshmanaperumal N, Henry I, Rink JC Reactivating head regrowth in a regeneration-deficient planarian species. Nature. 2013 Aug 1;500(7460):81–4	Nature	2013
Trushko A, Schäffer E, Howard J The growth speed of microtubules with XMAP215-coated beads coupled to their ends is increased by tensile force. Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14670–5	Proc Natl Acad Sci U S A	2013
Geyer VF, Jülicher F, Howard J, Friedrich BM Cell-body rocking is a dominant mechanism for flagellar synchronization in a swimming alga. Proc Natl Acad Sci U S A. 2013 Nov 5;110(45):18058–63	Proc Natl Acad Sci U S A	2013
Biro M, Romeo Y, Kroschwald S, Bovellan M, Boden A, Tcherkezian J, Roux PP, Charras G, Paluch EK Cell cortex composition and homeostasis resolved by integrating proteomics and quantitative imaging. Cytoskeleton (Hoboken). 2013 Oct 17	Cytoskeleton	2013
Coelho M, Dereli A, Haese A, Kühn S, Malinovska L, Desantis ME, Shorter J, Alberti S, Gross T, Tolić-Nørrelykke IM Fission Yeast Does Not Age under Favorable Conditions, but Does So after Stress. Curr Biol. 2013 Oct 7;23(19):1844–52	Curr Biol	2013
Gupta M, Brand M Identification and Expression Analysis of Zebrafish Glypicans during Embryonic Development. PLoS One. 2013 Nov 14;8(11):e80824	PLoS One	2013
Erkut C, Vasilj A, Boland S, Habermann B, Shevchenko A, Kurzchalia TV Molecular Strategies of the Caenorhabditis elegans Dauer Larva to Survive Extreme Desiccation. PLoS One. 2013 Dec 4;8(12):e82473	PLoS One	2013
Gerl MJ, Sampaio JL, Urban S, Kalvodova L, Verbavatz JM, Binnington B, Lindemann D, Lingwood CA, Shevchenko A, Schroeder C, Simons K Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane. J Cell Biol. 2012 Jan 23;196(2):213–21	J Cell Biol	2012
Ganz J, Kaslin J, Freudenreich D, Machate A, Geffarth M, Brand M Subdivisions of the adult zebrafish subpallium by molecular marker analysis. J Comp Neurol. 2012 Feb 15;520(3):633–55	J Comp Neurol	2012
Chakraborty D, Kappei D, Theis M, Nitzsche A, Ding L, Paszkowski-Rogacz M, Surendranath V, Berger N, Schulz H, Saar K, Hubner N, Buchholz F Combined RNAi and localization for functionally dissecting long noncoding RNAs. Nat Methods. 2012 Feb 12;9(4):360–2	Nat Methods	2012
Kelava I, Reillo I, Murayama AY, Kalinka AT, Stenzel D, Tomancak P, Matsuzaki F, Lebrand C, Sasaki E, Schwamborn JC, Okano H, Huttner WB, Borrell V Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus. Cereb Cortex. 2012 Feb;22(2):469–81	Cereb Cortex	2012
Betaneli V, Petrov EP, Schwille P The role of lipids in VDAC oligomerization. Biophys J. 2012 Feb 8;102(3):523–31	Biophys J	2012
Sezgin E, Levental I, Grzybek M, Schwarzmann G, Mueller V, Honigmann A, Belov VN, Eggeling C, Coskun U, Simons K, Schwille P Partitioning, diffusion, and ligand binding of raft lipid analogs in model and cellular plasma membranes. Biochim Biophys Acta. 2012 Mar 17;1818(7):1777–1784	Biochim Biophys Acta	2012
Klose C, Surma MA, Gerl MJ, Meyenhofer F, Shevchenko A, Simons K Flexibility of a eukaryotic lipidome – insights from yeast lipidomics. PLoS One. 2012;7(4):e35063	PLoS One	2012
Aliee M, Röper JC, Landsberg KP, Pentzold C, Widmann TJ, Jülicher F, Dahmann Physical mechanisms shaping the Drosophila dorsoventral compartment boundary. C. Curr Biol. 2012 May 2	Curr Biol	2012
Winter JF, Höpfner S, Korn K, Farnung BO, Bradshaw CR, Marsico G, Volkmer M, Habermann B, Zerial M Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity. Nat Cell Biol. 2012 May 27	Nat Cell Biol	2012
Sezgin E, Kaiser HJ, Baumgart T, Schwille P, Simons K, Levental I Elucidating membrane structure and protein behavior using giant plasma membrane vesicles. Nat Protoc. 2012 May 3;7(6):1042–51	Nat Protoc	2012
Saalfeld S, Fetter R, Cardona A, Tomancak P Elastic volume reconstruction from series of ultra-thin microscopy sections. Nat Methods. 2012 Jun 10;9(7):717–20	Nat Methods	2012
Weber M, Huisken J Omnidirectional microscopy. Nat Methods. 2012 Jun 28;9(7):656–7	Nat Methods	2012
Palm W, Sampaio JL, Brankatschk M, Carvalho M, Mahmoud A, Shevchenko A, Eaton S Lipoproteins in Drosophila melanogaster--assembly, function, and influence on tissue lipid composition. PLoS Genet. 2012 Jul;8(7):e1002828	PLoS Genet	2012
Schröter C, Ares S, Morelli LG, Isakova A, Hens K, Soroldoni D, Gajewski M, Jülicher F, Maerkl SJ, Deplancke B, Oates AC Topology and dynamics of the zebrafish segmentation clock core circuit. PLoS Biol. 2012 Jul;10(7):e1001364	PLoS Biol	2012
Bormuth V, Nitzsche B, Ruhnow F, Mitra A, Storch M, Rammner B, Howard J, Diez S The highly processive kinesin-8, Kip3, switches microtubule protofilaments with a bias toward the left. Biophys J. 2012 Jul 3;103(1):L4–6	Biophys J	2012
Vasilj A, Gentzel M, Ueberham E, Gebhardt R, Shevchenko A Tissue proteomics by one-dimensional gel electrophoresis combined with label-free protein quantification. J Proteome Res. 2012 Jul 6;11(7):3680–9	J Proteome Res	2012
Fietz SA, Lachmann R, Brandl H, Kircher M, Samusik N, Schröder R, Lakshmanaperumal N, Henry I, Vogt J, Riehn A, Distler W, Nitsch R, Enard W, Pääbo S, Huttner WB Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11836–41	Proc Natl Acad Sci U S A	2012
Bieberstein NI, Oesterreich FC, Straube K, Neugebauer KM First exon length controls active chromatin signatures and transcription. Cell Rep. 2012 Jul 26;2(1):62–8	Cell Rep	2012
Carvalho M, Sampaio JL, Palm W, Brankatschk M, Eaton S, Shevchenko A Effects of diet and development on the Drosophila lipidome. Mol Syst Biol. 2012 Jul 31;8:600	Mol Syst Bio	2012
Malinovska L, Kroschwald S, Munder MC, Richter D, Alberti S Molecular chaperones and stress-inducible protein-sorting factors coordinate the spatiotemporal distribution of protein aggregates. Mol Biol Cell. 2012 Aug;23(16):3041–56	Mol Biol Cell	2012
Surma MA, Klose C, Simons K Lipid-dependent protein sorting at the trans-Golgi network. Biochim Biophys Acta. 2012 Aug;1821(8):1059–67	Biochim Biophys Acta	2012
Sezgin E, Schwille P Model membrane platforms to study protein-membrane interactions. Mol Membr Biol. 2012 Aug;29(5):144–54	Mol Membr Biol	2012
Arumugam S, Chwastek G, Fischer-Friedrich E, Ehrig C, Mönch I, Schwille P Surface Topology Engineering of Membranes for the Mechanical Investigation of the Tubulin Homologue FtsZ. Angew Chem Int Ed Engl. 2012 Aug 31	Angew Chem Int Ed Engl	2012
Kaufmann A, Mickoleit M, Weber M, Huisken J Multilayer mounting enables long-term imaging of zebrafish development in a light sheet microscope. Development. 2012 Sep;139(17):3242–7	Development	2012
Betaneli V, Worch R, Schwille P Effect of temperature on the formation of liquid phase-separating giant unilamellar vesicles (GUV). Chem Phys Lipids. 2012 Sep;165(6):630–7	Chem Phys Lipids	2012
Bergert M, Chandradoss SD, Desai RA, Paluch E Cell mechanics control rapid transitions between blebs and lamellipodia during migration. Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14434–9	Proc Natl Acad Sci U S A	2012
Okaz E, Argüello-Miranda O, Bogdanova A, Vinod PK, Lipp JJ, Markova Z, Zagoriy I, Novak B, Zachariae W Meiotic prophase requires proteolysis of M phase regulators mediated by the meiosis-specific APC/CAma1. Cell. 2012 Oct 26;151(3):603–18	Cell	2012
Behrndt M, Salbreux G, Campinho P, Hauschild R, Oswald F, Roensch J, Grill SW, Heisenberg CP Forces driving epithelial spreading in zebrafish gastrulation. Science. 2012 Oct 12;338(6104):257–60	Science	2012
Maître JL, Berthoumieux H, Krens SF, Salbreux G, Jülicher F, Paluch E, Heisenberg CP Adhesion Functions in Cell Sorting by Mechanically Coupling the Cortices of Adhering Cells. Science. 2012 Oct 12;338(6104):253–6	Science	2012
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Langenberg T, Dracz T, Oates AC, Heisenberg CP, Brand M Analysis and visualization of cell movement in the developing zebrafish brain. Dev Dyn. 2006 Apr;235(4):928–33	Dev Dynam	2006
Glaser S, Schaft J, Lubitz S, Vintersten K, van der Hoeven F, Tufteland KR, Aasland R, Anastassiadis K, Ang SL, Stewart AF Multiple epigenetic maintenance factors implicated by the loss of Mll2 in mouse development. Development. 2006 Apr;133(8):1423–32. Epub 2006 Mar 15	Development	2006
Cisneros DA, Muller DJ, Daud SM, Lakey JH An approach to prepare membrane proteins for single-molecule imaging. Angew Chem Int Ed Engl. 2006 May 12;45(20):3252–6. No abstract available	Angew Chem Int Ed	2006
Cunha AC, Weigle B, Kiessling A, Bachmann M, Rieber EP Tissue-specificity of prostate specific antigens: comparative analysis of transcript levels in prostate and non-prostatic tissues. Cancer Lett. 2006 May 18;236(2):229–38. Epub 2005 Jul 19	Cancer Lett	2006
Trajkovski M, Mziaut H, Schwarz PE, Solimena M Genes of type 2 diabetes in beta cells. Endocrinol Metab Clin North Am. 2006 Jun;35(2):357–69, x. Review	Endocrinol Metab Clin	2006
Link V, Carvalho L, Castanon I, Stockinger P, Shevchenko A, Heisenberg CP Identification of regulators of germ layer morphogenesis using proteomics in zebrafish. J Cell Sci. 2006 May 15;119(Pt 10):2073–83. Epub 2006 Apr 25	J Cell Sci	2006
Benenati G, Penkov S, Müller-Reichert T, Entchev EV, Kurzchalia TV Two cytochrome P450s in Caenorhabditis elegans are essential for the organization of eggshell, correct execution of meiosis and the polarization of embryo. Mech Dev. 2009 May-Jun;126(5–6):382–93. Epub 2009 Feb 11	Mech Develop	2006
Proszynski TJ, Klemm R, Bagnat M, Gaus K, Simons K Plasma membrane polarization during mating in yeast cells. J Cell Biol. 2006 Jun 19;173(6):861–6. Epub 2006 Jun 12	J Cell Biol	2006
Cisneros DA, Hung C, Franz CM, Muller DJ Observing growth steps of collagen self-assembly by time-lapse high-resolution atomic force microscopy. J Struct Biol. 2006 Jun;154(3):232–45. Epub 2006 Mar 20	J Struct Biol	2006
Khalimonchuk O, Ott M, Funes S, Ostermann K, Rödel G, Herrmann JM Sequential processing of a mitochondrial tandem protein: insights into protein import in Schizosaccharomyces pombe. Eukaryot Cell. 2006 Jul;5(7):997–1006	Eukaryot Cell	2006
Fish JL, Kosodo Y, Enard W, Pääbo S, Huttner WB Aspm specifically maintains symmetric proliferative divisions of neuroepithelial cells. Proc Natl Acad Sci U S A. 2006 Jul 5;103(27):10438–43. Epub 2006 Jun 23	Proc Natl Acad Sci	2006
Dinu CZ, Opitz J, Pompe W, Howard J, Mertig M, Diez S Parallel manipulation of bifunctional DNA molecules on structured surfaces using kinesin-driven microtubules. Small. 2006 Aug;2(8–9):1090–8	Small	2006
Erler A, Maresca M, Fu J, Stewart AF Recombineering reagents for improved inducible expression and selection marker re-use in Schizosaccharomyces pombe. Yeast. 2006 Aug;23(11):813–23	Yeast	2006
Ejsing CS, Duchoslav E, Sampaio J, Simons K, Bonner R, Thiele C, Ekroos K, Shevchenko A Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning. Anal Chem. 2006 Sep 1;78(17):6202–14	Anal Chem	2006
Schonegg S, Hyman AA CDC-42 and RHO-1 coordinate acto-myosin contractility and PAR protein localization during polarity establishment in C. elegans embryos. Development. 2006 Sep;133(18):3507–16. Epub 2006 Aug 9	Development	2006
Wielsch N, Thomas H, Surendranath V, Waridel P, Frank A, Pevzner P, Shevchenko A Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches. J Proteome Res. 2006 Sep;5(9):2448–56. PMID: 16944958 [PubMed – indexed for MEDLINE]	J Proteome Res	2006
Varga V, Helenius J, Tanaka K, Hyman AA, Tanaka TU, Howard J Yeast kinesin-8 depolymerizes microtubules in a length-dependent manner. Nat Cell Biol. 2006 Sep;8(9):957–62. Epub 2006 Aug 13	Nat Cell Biol	2006
Listerman I, Sapra AK, Neugebauer KM Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. Nat Struct Mol Biol. 2006 Sep;13(9):815–22. Epub 2006 Aug 20	Nat Struct Mol Biol	2006
Kedrov A, Ziegler C, Muller DJ Differentiating ligand and inhibitor interactions of a single antiporter. J Mol Biol. 2006 Oct 6;362(5):925–32. Epub 2006 Jul 28	J Mol Biol	2006
Reuther C, Hajdo L, Tucker R, Kasprzak AA, Diez S Biotemplated nanopatterning of planar surfaces with molecular motors. Nano Lett. 2006 Oct;6(10):2177–83. PMID: 17034079 [PubMed – indexed for MEDLINE]	Nano Lett	2006
Sarov M, Schneider S, Pozniakovski A, Roguev A, Ernst S, Zhang Y, Hyman AA, Stewart AF A recombineering pipeline for functional genomics applied to Caenorhabditis elegans. Nat Methods. 2006 Oct;3(10):839–44	Nat Methods	2006
Demontis F, Habermann B, Dahmann C PDZ-domain-binding sites are common among cadherins. Dev Genes Evol. 2006 Nov;216(11):737–41. Epub 2006 Oct 5	Dev Genes Evol	2006
Schuck S, Gerl MJ, Ang A, Manninen A, Keller P, Mellman I, Simons K Rab10 is involved in basolateral transport in polarized Madin-Darby canine kidney cells. Traffic. 2007 Jan;8(1):47–60. Epub 2006 Nov 21	Traffic	2006
Balana B, Nicoletti C, Zahanich I, Graf EM, Christ T, Boxberger S, Ravens U 5-Azacytidine induces changes in electrophysiological properties of human mesenchymal stem cells. Cell Res. 2006 Dec;16(12):949–60	Cell Res	2006
Witzel S, Zimyanin V, Carreira-Barbosa F, Tada M, Heisenberg CP Wnt11 controls cell contact persistence by local accumulation of Frizzled 7 at the plasma membrane. J Cell Biol. 2006 Dec 4;175(5):791–802. Epub 2006 Nov 27	J Cell Biol	2006
Schnapp E, Tanaka EM Quantitative evaluation of morpholino-mediated protein knockdown of GFP, MSX1, and PAX7 during tail regeneration in Ambystoma mexicanum. Dev Dyn. 2005 Jan;232(1):162–70	Dev Dynam	2005
Meder D, Shevchenko A, Simons K, Füllekrug J Gp135/podocalyxin and NHERF-2 participate in the formation of a preapical domain during polarization of MDCK cells. J Cell Biol. 2005 Jan 17;168(2):303–13. Epub 2005 Jan 10	J Cell Biol	2005
Kuerschner L, Ejsing CS, Ekroos K, Shevchenko A, Anderson KI, Thiele C Polyene-lipids: a new tool to image lipids. Nat Methods. 2005 Jan;2(1):39–45. Epub 2004 Dec 21	Nat Methods	2005
Kittler R, Pelletier L, Ma C, Poser I, Fischer S, Hyman AA, Buchholz F RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells. Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2396–401. Epub 2005 Feb 3	Proc Natl Acad Sci	2005
Cisneros DA, Oesterhelt D, Müller DJ Probing origins of molecular interactions stabilizing the membrane proteins halorhodopsin and bacteriorhodopsin. Structure. 2005 Feb;13(2):235–42	Structure	2005
Oelschlaegel T, Schwickart M, Matos J, Bogdanova A, Camasses A, Havlis J, Shevchenko A, Zachariae W The yeast APC/C subunit Mnd2 prevents premature sister chromatid separation triggered by the meiosis-specific APC/C-Ama1. Cell. 2005 Mar 25;120(6):773–88	Cell	2005
Shen J, Dahmann C The role of Dpp signaling in maintaining the Drosophila anteroposterior compartment boundary. Dev Biol. 2005 Mar 1;279(1):31–43	Dev Biol	2005
Noetzel TL, Drechsel DN, Hyman AA, Kinoshita K A comparison of the ability of XMAP215 and tau to inhibit the microtubule destabilizing activity of XKCM1. Philos Trans R Soc Lond B Biol Sci. 2005 Mar 29;360(1455):591–4	Philos Trans R Soc Lond B Biol Sci	2005
Meder D, Simons K Cell biology. Ras on the roundabout. Science. 2005 Mar 18;307(5716):1731–3. No abstract available	Science	2005
Shen J, Dahmann C Extrusion of cells with inappropriate Dpp signaling from Drosophila wing disc epithelia. Science. 2005 Mar 18;307(5716):1789–90	Science	2005
Kittler R, Buchholz F Functional genomic analysis of cell division by endoribonuclease-prepared siRNAs. Cell Cycle. 2005 Apr;4(4):564–7. Epub 2005 Apr 19. Review	Cell Cycle	2005
Kronekova Z, Rödel G Organization of assembly factors Cbp3p and Cbp4p and their effect on bc(1) complex assembly in Saccharomyces cerevisiae. Curr Genet. 2005 Apr;47(4):203–12. Epub 2005 Mar 10	Curr Genet	2005
Khalimonchuk O, Ostermann K, Rödel G Evidence for the association of yeast mitochondrial ribosomes with Cox11p, a protein required for the Cu(B) site formation of cytochrome c oxidase. Curr Genet. 2005 Apr;47(4):223–33. Epub 2005 Mar 18	Curr Genet	2005
Suchanek M, Radzikowska A, Thiele C Photo-leucine and photo-methionine allow identification of protein-protein interactions in living cells. Nat Methods. 2005 Apr;2(4):261–7. Epub 2005 Mar 23	Nat Methods	2005
Hoepfner S, Severin F, Cabezas A, Habermann B, Runge A, Gillooly D, Stenmark H, Zerial M Modulation of receptor recycling and degradation by the endosomal kinesin KIF16B. Cell. 2005 May 6;121(3):437–50	Cell	2005
Panáková D, Sprong H, Marois E, Thiele C, Eaton S Lipoprotein particles are required for Hedgehog and Wingless signalling. Nature. 2005 May 5;435(7038):58–65	Nature	2005
Langenberg T, Brand M Lineage restriction maintains a stable organizer cell population at the zebrafish midbrain-hindbrain boundary. Development. 2005 Jul;132(14):3209–16. Epub 2005 Jun 15	Development	2005
Schnapp E, Kragl M, Rubin L, Tanaka EM Hedgehog signaling controls dorsoventral patterning, blastema cell proliferation and cartilage induction during axolotl tail regeneration. Development. 2005 Jul;132(14):3243–53	Development	2005
Kedrov A, Krieg M, Ziegler C, Kuhlbrandt W, Muller DJ Locating ligand binding and activation of a single antiporter. EMBO Rep. 2005 Jul;6(7):668–74	EMBO Rep	2005
Riedel IH, Kruse K, Howard J A self-organized vortex array of hydrodynamically entrained sperm cells. Science. 2005 Jul 8;309(5732):300–3	Science	2005
Ozlü N, Srayko M, Kinoshita K, Habermann B, O'toole ET, Müller-Reichert T, Schmalz N, Desai A, Hyman AA An essential function of the C. elegans ortholog of TPX2 is to localize activated aurora A kinase to mitotic spindles. Dev Cell. 2005 Aug;9(2):237–48	Dev Cell	2005
Bringmann H, Hyman AA A cytokinesis furrow is positioned by two consecutive signals. Nature. 2005 Aug 4;436(7051):731–4	Nature	2005
Rink J, Ghigo E, Kalaidzidis Y, Zerial M Rab conversion as a mechanism of progression from early to late endosomes. Cell. 2005 Sep 9;122(5):735–49	Cell	2005
Zahanich I, Graf EM, Heubach JF, Hempel U, Boxberger S, Ravens U Molecular and functional expression of voltage-operated calcium channels during osteogenic differentiation of human mesenchymal stem cells. J Bone Miner Res. 2005 Sep;20(9):1637–46. Epub 2005 May 31	J Bone Miner Res	2005
Kovalchuk A, Senam S, Mauersberger S, Barth G Tyl6, a novel Ty3/gypsy-like retrotransposon in the genome of the dimorphic fungus Yarrowia lipolytica. Yeast. 2005 Sep;22(12):979–91	Yeast	2005
Ulrich F, Krieg M, Schötz EM, Link V, Castanon I, Schnabel V, Taubenberger A, Mueller D, Puech PH, Heisenberg CP Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin. Dev Cell. 2005 Oct;9(4):555–64	Dev Cell	2005
Kittler R, Heninger AK, Franke K, Habermann B, Buchholz F Production of endoribonuclease-prepared short interfering RNAs for gene silencing in mammalian cells. Nat Methods. 2005 Oct;2(10):779–84. No abstract available	Nat Methods	2005
Kalvodova L, Kahya N, Schwille P, Ehehalt R, Verkade P, Drechsel D, Simons K Lipids as modulators of proteolytic activity of BACE: involvement of cholesterol, glycosphingolipids, and anionic phospholipids in vitro. J Biol Chem. 2005 Nov 4;280(44):36815–23. Epub 2005 Aug 22	J Cell Biol	2005
Glaser S, Anastassiadis K, Stewart AF Current issues in mouse genome engineering. Nat Genet. 2005 Nov;37(11):1187–93. Review	Nat Genetics	2005
Liska AJ, Sunyaev S, Shilov IN, Schaeffer DA, Shevchenko A Error-tolerant EST database searches by tandem mass spectrometry and multiTag software. Proteomics. 2005 Nov;5(16):4118–22	Proteomics	2005
Classen AK, Anderson KI, Marois E, Eaton S Hexagonal packing of Drosophila wing epithelial cells by the planar cell polarity pathway. Dev Cell. 2005 Dec;9(6):805–17	Dev Cell	2005
Khalimonchuk O, Rödel G Biogenesis of cytochrome c oxidase. Mitochondrion. 2005 Dec;5(6):363–88. Epub 2005 Sep 29. Review	Mitochondrion	2005
Proszynski TJ, Klemm RW, Gravert M, Hsu PP, Gloor Y, Wagner J, Kozak K, Grabner H, Walzer K, Bagnat M, Simons K, Walch-Solimena C A genome-wide visual screen reveals a role for sphingolipids and ergosterol in cell surface delivery in yeast. Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):17981–6. Epub 2005 Dec 5	Proc Natl Acad Sci	2005
Roguev A, Shevchenko A, Schaft D, Thomas H, Stewart AF, Shevchenko A A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics. 2004 Feb;3(2):125–32. Epub 2003 Nov 15	Mol Cell Proteomics	2004
Proszynski TJ, Simons K, Bagnat M O-glycosylation as a sorting determinant for cell surface delivery in yeast. Mol Biol Cell. 2004 Apr;15(4):1533–43. Epub 2004 Jan 23	Mol Biol Cell	2004
Schwickart M, Havlis J, Habermann B, Bogdanova A, Camasses A, Oelschlaegel T, Shevchenko A, Zachariae W Swm1/Apc13 is an evolutionarily conserved subunit of the anaphase-promoting complex stabilizing the association of Cdc16 and Cdc27. Mol Cell Biol. 2004 Apr;24(8):3562–76	Mol Cell Biol	2004
Schuck S, Manninen A, Honsho M, Füllekrug J, Simons K Generation of single and double knockdowns in polarized epithelial cells by retrovirus-mediated RNA interference. Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4912–7. Epub 2004 Mar 29	Proc Natl Acad Sci	2004
Straube WL, Brockes JP, Drechsel DN, Tanaka EM Plasticity and reprogramming of differentiated cells in amphibian regeneration: partial purification of a serum factor that triggers cell cycle re-entry in differentiated muscle cells. Cloning Stem Cells. 2004;6(4):333–44	Cloning Stem Cells	2004
Kedrov A, Ziegler C, Janovjak H, Kühlbrandt W, Müller DJ Controlled unfolding and refolding of a single sodium-proton antiporter using atomic force microscopy. J Mol Biol. 2004 Jul 23;340(5):1143–52	J Mol Biol	2004
Dudu V, Pantazis P, González-Gaitán M Membrane traffic during embryonic development: epithelial formation, cell fate decisions and differentiation. Curr Opin Cell Biol. 2004 Aug;16(4):407–14. Review	Curr Opin Cell Biol	2004
Schnatwinkel C, Christoforidis S, Lindsay MR, Uttenweiler-Joseph S, Wilm M, Parton RG, Zerial M The Rab5 effector Rabankyrin-5 regulates and coordinates different endocytic mechanisms. PLoS Biol. 2004 Sep;2(9):E261. Epub 2004 Aug 24	PLoS Biol	2004
Khattak S, Darai G, Rösen-Wolff A Puumala virus nucleocapsid protein expressed in transgenic plants is not immunogenic after oral administration. Virus Genes. 2004 Aug;29(1):109–16	Virus Genes	2004
Liska AJ, Shevchenko A, Pick U, Katz A Enhanced photosynthesis and redox energy production contribute to salinity tolerance in Dunaliella as revealed by homology-based proteomics. Plant Physiol. 2004 Sep;136(1):2806–17. Epub 2004 Aug 27	Plant Physiol	2004
Liska AJ, Popov AV, Sunyaev S, Coughlin P, Habermann B, Shevchenko A, Bork P, Karsenti E, Shevchenko A Homology-based functional proteomics by mass spectrometry: application to the Xenopus microtubule-associated proteome. Proteomics. 2004 Sep;4(9):2707–21	Proteomics	2004
Konstantinova I, Lammert E Microvascular development: learning from pancreatic islets. Bioessays. 2004 Oct;26(10):1069–75. Review	Bioessays	2004
Trajkovski M, Mziaut H, Altkrüger A, Ouwendijk J, Knoch KP, Müller S, Solimena M Nuclear translocation of an ICA512 cytosolic fragment couples granule exocytosis and insulin expression in {beta}-cells. J Cell Biol. 2004 Dec 20;167(6):1063–74. Epub 2004 Dec 13	J Cell Biol	2004
Schuck S, Simons K Polarized sorting in epithelial cells: raft clustering and the biogenesis of the apical membrane. J Cell Sci. 2004 Dec 1;117(Pt 25):5955–64. Review	J Cell Sci	2004
Kittler R, Putz G, Pelletier L, Poser I, Heninger AK, Drechsel D, Fischer S, Konstantinova I, Habermann B, Grabner H, Yaspo ML, Himmelbauer H, Korn B, Neugebauer K, Pisabarro MT, Buchholz F An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division. Nature. 2004 Dec 23;432(7020):1036–40. PMID: 15616564 [PubMed – indexed for MEDLINE]	Nature	2004
Liska AJ, Shevchenko A Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications. Proteomics. 2003 Jan;3(1):19–28. Review	Proteomics	2003
Roguev A, Schaft D, Shevchenko A, Aasland R, Shevchenko A, Stewart AF High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. J Biol Chem. 2003 Mar 7;278(10):8487–93. Epub 2002 Dec 17	J Biol Chem	2003
van Breugel M, Drechsel D, Hyman A Stu2p, the budding yeast member of the conserved Dis1/XMAP215 family of microtubule-associated proteins is a plus end-binding microtubule destabilizer. J Cell Biol. 2003 Apr 28;161(2):359–69	J Cell Biol	2003
Siekmann AF, Brand M Distinct tissue-specificity of three zebrafish ext1 genes encoding proteoglycan modifying enzymes and their relationship to somitic Sonic hedgehog signaling. Dev Dyn. 2005 Feb;232(2):498–505	Dev Dynam	2003
Schuck S, Honsho M, Ekroos K, Shevchenko A, Simons K Resistance of cell membranes to different detergents. Proc Natl Acad Sci U S A. 2003 May 13;100(10):5795–800. Epub 2003 Apr 29	Proc Natl Acad Sci	2003
Kotovic KM, Lockshon D, Boric L, Neugebauer KM Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast. Mol Cell Biol. 2003 Aug;23(16):5768–79	Mol Cell Biol	2003
Kittler R, Buchholz F RNA interference: gene silencing in the fast lane. Semin Cancer Biol. 2003 Aug;13(4):259–65. Review	Semin Cancer Biol	2003
Nikolova G, Lammert E Interdependent development of blood vessels and organs. Cell Tissue Res. 2003 Oct;314(1):33–42. Epub 2003 Aug 1. Review	Cell Tissue Res	2003
Langenberg T, Brand M, Cooper MS Imaging brain development and organogenesis in zebrafish using immobilized embryonic explants. Dev Dyn. 2003 Nov;228(3):464–74	Dev Dynam	2003
Ulrich F, Concha ML, Heid PJ, Voss E, Witzel S, Roehl H, Tada M, Wilson SW, Adams RJ, Soll DR, Heisenberg CP Slb/Wnt11 controls hypoblast cell migration and morphogenesis at the onset of zebrafish gastrulation. Development. 2003 Nov;130(22):5375–84. Epub 2003 Sep 16	Development	2003
Balana B, Dobrev D, Wettwer E, Christ T, Knaut M, Ravens U Decreased ATP-sensitive K(+) current density during chronic human atrial fibrillation. J Mol Cell Cardiol. 2003 Dec;35(12):1399–405	J Mol Cell Cardiol	2003
Khattak S, Darai G, Süle S, Rösen-Wolff A Characterization of expression of Puumala virus nucleocapsid protein in transgenic plants. Intervirology. 2002;45(4–6):334–9	Intervirology	2002
Roguev A, Schaft D, Shevchenko A, Pijnappel WW, Wilm M, Aasland R, Stewart AF The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4. EMBO J. 2001 Dec 17;20(24):7137–48	EMBO J	2001

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2018 PhD Positions

Application Opens: Sep 2017

Application Closes: Jan 2018

Interview Week: 5 - 9 March 2018