Publications

Our PhD students have published great scientific stories resulting from their discoveries. View below a selection of top first-author publications resulting from their time in the IMPRS-CellDevoSys, or search the publication database on our main Max Planck Institute webpage.

Title Journal Publication year
Turrero García M, Chang Y, Arai Y, Huttner WB
S-phase duration is the main target of cell cycle regulation in neural progenitors of developing ferret neocortex.
J Comp Neurol. 2016 Feb 15;524(3):456–70
J Comp Neurol 2016
Stapel LC, Lombardot B, Broaddus C, Kainmueller D, Jug F, Myers EW, Vastenhouw NL
Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos.
Development. 2016 Feb 1;143(3):540–6
Development 2016
Naganathan SR, Middelkoop TC, Fürthauer S, Grill SW
Actomyosin-driven left-right asymmetry: from molecular torques to chiral self organization.
Curr Opin Cell Biol. 2016 Feb;38:24–30
Curr Opin Cell Biol 2016
Lisica A, Engel C, Jahnel M, Roldán É, Galburt EA, Cramer P, Grill SW
Mechanisms of backtrack recovery by RNA polymerases I and II.
Proc Natl Acad Sci U S A. 2016 Feb 29. pii: 201517011
Proc Natl Acad Sci U S A 2016
Millonigg S, Minasaki R, Nousch M, Novak J, Eckmann CR
Correction: GLD-4-Mediated Translational Activation Regulates the Size of the Proliferative Germ Cell Pool in the Adult C. elegans Germ Line.
PLoS Genet. 2016 Feb 9;12(2):e1005862
PLoS Genet 2016
Schürmann M, Scholze J, Müller P, Guck J, Chan CJ
Cell nuclei have lower refractive index and mass density than cytoplasm.
J Biophotonics. 2016 Mar 24
J Biophotonics 2016
Munder MC, Midtvedt D, Franzmann T, Nüske E, Otto O, Herbig M, Ulbricht E, Müller P, Taubenberger A, Maharana S, Malinovska L, Richter D, Guck J, Zaburdaev V, Alberti S
A pH-driven transition of the cytoplasm from a fluid- to a solid-like state promotes entry into dormancy.
Elife. 2016 Mar 22;5. pii: e09347
Elife 2016
Afshar Y, Sbalzarini IF
A Parallel Distributed-Memory Particle Method Enables Acquisition-Rate Segmentation of Large Fluorescence Microscopy Images.
PLoS One. 2016 Apr 5;11(4):e0152528
PLoS One 2016
Geyer VF, Sartori P, Friedrich BM, Jülicher F, Howard J
Independent Control of the Static and Dynamic Components of the Chlamydomonas Flagellar Beat.
Curr Biol. 2016 Apr 25;26(8):1098–103
Curr Biol 2016
Villaseñor R, Kalaidzidis Y, Zerial M
Signal processing by the endosomal system.
Curr Opin Cell Biol. 2016 Apr;39:53–60
Curr Opin Cell Biol 2016
Erkut C, Gade VR, Laxman S, Kurzchalia TV
The glyoxylate shunt is essential for desiccation tolerance in C. elegans and budding yeast.
Elife. 2016 Apr 19;5. pii: e13614
Elife 2016
Stepanek L, Pigino G
Microtubule doublets are double-track railways for intraflagellar transport trains.
Science. 2016 May 6;352(6286):721–4
Science 2016
Ananthanarayanan V, Tolić IM
Single-molecule imaging of cytoplasmic dynein in vivo.
Methods Cell Biol. 2015;125:1–12
Methods Cell Biol 2015
Strzyz PJ, Lee HO, Sidhaye J, Weber IP, Leung LC, Norden C
Interkinetic nuclear migration is centrosome independent and ensures apical cell division to maintain tissue integrity.
Dev Cell. 2015 Jan 26;32(2):203–19
Dev Cell 2015
Decker F, Brugués J
Dissecting microtubule structures by laser ablation.
Methods Cell Biol. 2015;125:61–75
Methods Cell Biol 2015
Villaseñor R, Nonaka H, Del Conte-Zerial P, Kalaidzidis Y, Zerial M
Regulation of EGFR signal transduction by analogue-to-digital conversion in endosomes.
Elife. 2015 Feb 4;4
Elife 2015
Florio M, Albert M, Taverna E, Namba T, Brandl H, Lewitus E, Haffner C, Sykes A, Wong FK, Peters J, Guhr E, Klemroth S, Prüfer K, Kelso J, Naumann R, Nüsslein I, Dahl A, Lachmann R, Pääbo S, Huttner WB
Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion.
Science. 2015 Feb 26. pii: aaa1975
Science 2015
Heyn P, Kalinka AT, Tomancak P, Neugebauer KM
Introns and gene expression: Cellular constraints, transcriptional regulation, and evolutionary consequences.
Bioessays. 2015 Feb;37(2):148–54
Bioessays 2015
Begasse ML, Leaver M, Vazquez F, Grill SW, Hyman AA
Temperature Dependence of Cell Division Timing Accounts for a Shift in the Thermal Limits of C. elegans and C. briggsae.
Cell Rep. 2015 Feb 4. pii: S2211–1247(15)00007–8
Cell Rep 2015
Khaliullina H, Bilgin M, Sampaio JL, Shevchenko A, Eaton S
Endocannabinoids are conserved inhibitors of the Hedgehog pathway.
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3415–20
Proc Natl Acad Sci U S A 2015
Bergert M, Erzberger A, Desai RA, Aspalter IM, Oates AC, Charras G, Salbreux G, Paluch EK
Force transmission during adhesion-independent migration.
Nat Cell Biol. 2015 Apr;17(4):524–9
Nat Cell Biol 2015
Turrero García M, Chang Y, Arai Y, Huttner WB
S-phase duration is the main target of cell cycle regulation in neural progenitors of developing ferret neocortex.
J Comp Neurol. 2015 May 10
J Comp Neurol 2015
Dunst S, Kazimiers T, von Zadow F, Jambor H, Sagner A, Brankatschk B, Mahmoud A, Spannl S, Tomancak P, Eaton S, Brankatschk M
Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila.
Dev Cell. 2015 May 4;33(3):351–65
Dev Cell 2015
Malinovska L, Palm S, Gibson K, Verbavatz JM, Alberti S
Dictyostelium discoideum has a highly Q/N-rich proteome and shows an unusual resilience to protein aggregation.
Proc Natl Acad Sci U S A. 2015 May 19;112(20):E2620–9
Proc Natl Acad Sci U S A 2015
Machyna M, Neugebauer KM, Staněk D
Coilin: The first 25 years.
RNA Biol. 2015;12(6):590–6
RNA Biol 2015
Kumichel A, Kapp K, Knust E
A Conserved Di-Basic Motif of Drosophila Crumbs Contributes to Efficient ER Export.
Traffic. 2015 Jun;16(6):604–16
Traffic 2015
Coelho M, Tolić IM
Asymmetric damage segregation at cell division via protein aggregate fusion and attachment to organelles.
Bioessays. 2015 Jul;37(7):740–7
Bioessays 2015
Kroschwald S, Maharana S, Mateju D, Malinovska L, Nüske E, Poser I, Richter D, Alberti S
Promiscuous interactions and protein disaggregases determine the material state of stress-inducible RNP granules.
Elife. 2015 Aug 4;4:e06807
Elife 2015
Wong FK, Fei JF, Mora-Bermúdez F, Taverna E, Haffner C, Fu J, Anastassiadis K, Stewart AF, Huttner WB
Sustained Pax6 Expression Generates Primate-like Basal Radial Glia in Developing Mouse Neocortex.
PLoS Biol. 2015 Aug 7;13(8):e1002217
PLoS Biol 2015
Erkut C, Kurzchalia TV
The C. elegans dauer larva as a paradigm to study metabolic suppression and desiccation tolerance.
Planta. 2015 Aug;242(2):389–96
Planta 2015
Herzel L, Neugebauer KM
Quantification of co-transcriptional splicing from RNA-Seq data.
Methods. 2015 Sep 1;85:36–43
Methods 2015
Jahr W, Schmid B, Schmied C, Fahrbach FO, Huisken J
Hyperspectral light sheet microscopy.
Nat Commun. 2015 Sep 2;6:7990
Nat Commun 2015
Malinovska L, Alberti S
Protein misfolding in Dictyostelium: using a freak of nature to gain insight into a universal problem.
Prion. 2015 Nov 3:0
Prion 2015
Lavrynenko O, Rodenfels J, Carvalho M, Dye NA, Lafont R, Eaton S, Shevchenko A
The ecdysteroidome of Drosophila: influence of diet and development.
Development. 2015 Nov 1;142(21):3758–68
Development 2015
Hibbel A, Bogdanova A, Mahamdeh M, Jannasch A, Storch M, Schäffer E, Liakopoulos D, Howard J
Kinesin Kip2 enhances microtubule growth in vitro through length-dependent feedback on polymerization and catastrophe.
Elife. 2015 Nov 18;4. pii: e10542
Elife 2015
Schmied C, Steinbach P, Pietzsch T, Preibisch S, Tomancak P
An automated workflow for parallel processing of large multiview SPIM recordings.
Bioinformatics. 2015 Dec 1. pii: btv706
Bioinformatics 2015
Weber M, Huisken J
In vivo imaging of cardiac development and function in zebrafish using light sheet microscopy.
Swiss Med Wkly. 2015 Dec 23;145:w14227
Swiss Med Wkly 2015
Lin YH, Currinn H, Pocha SM, Rothnie A, Wassmer T, Knust E
AP-2-complex-mediated endocytosis of Drosophila Crumbs regulates polarity by antagonizing Stardust.
J Cell Sci. 2015 Dec 15;128(24):4538–49
J Cell Sci 2015
Morales-Navarrete H, Segovia-Miranda F, Klukowski P, Meyer K, Nonaka H, Marsico G, Chernykh M, Kalaidzidis A, Zerial M, Kalaidzidis Y
A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture.
Elife. 2015 Dec 27;4. pii: e11214
Elife 2015
Luz M, Spannl-Müller S, Ozhan G, Kagermeier-Schenk B, Rhinn M, Weidinger G, Brand M
Dynamic Association with Donor Cell Filopodia and Lipid-Modification Are Essential Features of Wnt8a during Patterning of the Zebrafish Neuroectoderm.
PLoS One. 2014 Jan 10;9(1):e84922
PLoS One 2014
Heyn P, Kircher M, Dahl A, Kelso J, Tomancak P, Kalinka AT, Neugebauer KM
The earliest transcribed zygotic genes are short, newly evolved, and different across species.
Cell Rep. 2014 Jan 30;6(2):285–92
Cell Rep 2014
Weber M, Mickoleit M, Huisken J
Multilayer mounting for long-term light sheet microscopy of zebrafish.
J Vis Exp. 2014 Feb 27;(84):e51119
J Vis Exp 2014
Stapel LC, Vastenhouw NL
Message control in developmental transitions; deciphering chromatin's role using zebrafish genomics.
Brief Funct Genomics. 2014 Mar;13(2):106–20
Brief Funct Genomics 2014
Kumichel A, Knust E
Apical localisation of crumbs in the boundary cells of the Drosophila hindgut is independent of its canonical interaction partner stardust.
PLoS One. 2014 Apr 7;9(4):e94038
PLoS One 2014
Gurudev N, Yuan M, Knust E
Chaoptin, prominin, eyes shut and crumbs form a genetic network controlling the apical compartment of Drosophila photoreceptor cells.
Biol Open. 2014 Apr 4;3(5):332–41
Biol Open 2014
Weber IP, Ramos AP, Strzyz PJ, Leung LC, Young S, Norden C
Mitotic position and morphology of committed precursor cells in the zebrafish retina adapt to architectural changes upon tissue maturation.
Cell Rep. 2014 Apr 24;7(2):386–97
Cell Rep 2014
Wong FK, Haffner C, Huttner WB, Taverna E
Microinjection of membrane-impermeable molecules into single neural stem cells in brain tissue.
Nat Protoc. 2014 May;9(5):1170–82
Nat Protoc 2014
Clark AG, Wartlick O, Salbreux G, Paluch EK
Stresses at the cell surface during animal cell morphogenesis.
Curr Biol. 2014 May 19;24(10):R484–94
Curr Biol 2014
Swierczynska MM, Mateska I, Peitzsch M2, Bornstein SR, Chavakis T, Eisenhofer G, Lamounier-Zepter V, Eaton S
Changes in morphology and function of adrenal cortex in mice fed a high-fat diet.
Int J Obes (Lond). 2014 Jun 12
Int J Obes (Lond) 2014
Florio M, Huttner WB
Neural progenitors, neurogenesis and the evolution of the neocortex.
Development. 2014 Jun;141(11):2182–94
Development 2014
Coelho M, Lade SJ, Alberti S, Gross T, Tolić IM
Fusion of protein aggregates facilitates asymmetric damage segregation.
PLoS Biol. 2014 Jun 17;12(6):e1001886
PLoS Biol 2014
Mickoleit M, Schmid B, Weber M, Fahrbach FO, Hombach S, Reischauer S, Huisken J
High-resolution reconstruction of the beating zebrafish heart.
Nat Methods. 2014 Sep;11(9):919–22
Nat Methods 2014
Millonigg S, Minasaki R, Nousch M, Eckmann CR
GLD-4-mediated translational activation regulates the size of the proliferative germ cell pool in the adult C. elegans germ line.
PLoS Genet. 2014 Sep 25;10(9):e1004647
PLoS Genet 2014
Podolski M, Mahamdeh M, Howard J
Stu2, the budding yeast XMAP215/Dis1 homolog, promotes assembly of yeast microtubules by increasing growth rate and decreasing catastrophe frequency.
J Biol Chem. 2014 Oct 10;289(41):28087–93
J Biol Chem 2014
Wueseke O, Bunkenborg J, Hein MY, Zinke A, Viscardi V, Woodruff JB, Oegema K, Mann M, Andersen JS, Hyman AA
The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix.
Mol Biol Cell. 2014 Oct 1;25(19):2984–92
Mol Biol Cell 2014
Perini ED, Schaefer R, Stöter M, Kalaidzidis Y, Zerial M
Mammalian CORVET is required for fusion and conversion of distinct early endosome subpopulations.
Traffic. 2014 Dec;15(12):1366–89
Traffic 2014
Rodenfels J, Lavrynenko O, Ayciriex S, Sampaio JL, Carvalho M, Shevchenko A, Eaton S
Production of systemically circulating Hedgehog by the intestine couples nutrition to growth and development.
Genes Dev. 2014 Dec 1;28(23):2636–51
Genes Dev 2014
Weber M, Mickoleit M, Huisken J
Light sheet microscopy.
Methods Cell Biol. 2014;123:193–215
Methods Cell Biol 2014
Planas-Paz L, Lammert E
Mechanosensing in developing lymphatic vessels.
Adv Anat Embryol Cell Biol. 2014;214:23–40
Adv Anat Embryol Cell Bio 2014
Bieberstein NI, Straube K, Neugebauer KM
Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing.
Methods Mol Biol. 2014;1126:315–23
Methods Mol Biol 2014
Schmied C, Stamataki E, Tomancak P
Open-source solutions for SPIMage processing.
Methods Cell Biol. 2014;123:505–29
Methods Cell Biol 2014
Gurudev N, Florek M, Corbeil D, Knust E
Prominent role of prominin in the retina.
Adv Exp Med Biol. 2013;777:55–71
Adv Exp Med Biol 2013
Machyna M, Heyn P, Neugebauer KM
Cajal bodies: where form meets function.
Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):17–34
Wiley Interdiscip Rev RNA 2013
Kragl M, Roensch K, Nüsslein I, Tazaki A, Taniguchi Y, Tarui H, Hayashi T, Agata K, Tanaka EM
Muscle and connective tissue progenitor populations show distinct Twist1 and Twist3 expression profiles during axolotl limb regeneration.
Dev Biol. 2013 Jan 1;373(1):196–204
Dev Biol 2013
Kalinina I, Nandi A, Delivani P, Chacón MR, Klemm AH, Ramunno-Johnson D, Krull A, Lindner B, Pavin N, Tolić-Nørrelykke IM
Pivoting of microtubules around the spindle pole accelerates kinetochore capture.
Nat Cell Biol. 2013 Jan;15(1):82–7
Nat Cell Biol 2013
Karimova M, Abi-Ghanem J, Berger N, Surendranath V, Pisabarro MT, Buchholz F
Vika/vox, a novel efficient and specific Cre/loxP-like site-specific recombination system.
Nucleic Acids Res. 2013 Jan;41(2):e37
Nucleic Acids Res 2013
Nacu E, Glausch M, Le HQ, Damanik FF, Schuez M, Knapp D, Khattak S, Richter T, Tanaka EM
Connective tissue cells, but not muscle cells, are involved in establishing the proximo-distal outcome of limb regeneration in the axolotl.
Development. 2013 Feb 1;140(3):513–8
Development 2013
Stevanovic A, Thiele C
Monotopic topology is required for lipid droplet targeting of ancient ubiquitous protein 1.
J Lipid Res. 2013 Feb;54(2):503–13
J Lipid Res 2013
Rostovskaya M, Naumann R, Fu J, Obst M, Mueller D, Stewart AF, Anastassiadis K
Transposon mediated BAC transgenesis via pronuclear injection of mouse zygotes.
Genesis. 2013 Feb;51(2):135–41
Genesis 2013
Firmino J, Tinevez JY, Knust E
Crumbs affects protein dynamics in anterior regions of the developing Drosophila embryo.
PLoS One. 2013;8(3):e58839
PLoS One 2013
Palm W, Swierczynska MM, Kumari V, Ehrhart-Bornstein M, Bornstein SR, Eaton S
Secretion and signaling activities of lipoprotein-associated hedgehog and non-sterol-modified hedgehog in flies and mammals.
PLoS Biol. 2013 Mar;11(3):e1001505
PLoS Biol 2013
Brugiolo M, Herzel L, Neugebauer KM
Counting on co-transcriptional splicing.
F1000Prime Rep. 2013 Apr 2;5:9
F1000Prime Rep 2013
Coelho M, Maghelli N, Tolić-Nørrelykke IM
Single-molecule imaging in vivo: the dancing building blocks of the cell.
Integr Biol (Camb). 2013 Apr 29;5(5):748–58
Integr Biol 2013
Gracida X, Eckmann CR
Fertility and germline stem cell maintenance under different diets requires nhr-114/HNF4 in C. elegans.
Curr Biol. 2013 Apr 8;23(7):607–13
Curr Biol 2013
Grotek B, Wehner D, Weidinger G
Notch signaling coordinates cellular proliferation with differentiation during zebrafish fin regeneration.
Development. 2013 Apr;140(7):1412–23
Development 2013
Planas-Paz L, Lammert E
Mechanical forces in lymphatic vascular development and disease.
Cell Mol Life Sci. 2013 May 12
Cell Mol Life Sci 2013
Malinovska L, Kroschwald S, Alberti S
Protein disorder, prion propensities, and self-organizing macromolecular collectives.
Biochim Biophys Acta. 2013 May;1834(5):918–31
Biochim Biophys Acta 2013
Kappei D, Butter F, Benda C, Scheibe M, Draškovič I, Stevense M, Novo CL, Basquin C, Araki M, Araki K, Krastev DB, Kittler R, Jessberger R, Londoño-Vallejo JA, Mann M, Buchholz F
HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment.
EMBO J. 2013 May 17
EMBO J 2013
Kelava I, Lewitus E, Huttner WB
The secondary loss of gyrencephaly as an example of evolutionary phenotypical reversal.
Front Neuroanat. 2013 Jun 26;7:16
Front Neuroanat 2013
Chwastek G, Schwille P
A monolayer assay tailored to investigate lipid-protein systems.
Chemphyschem. 2013 Jun 24;14(9):1877–81
Chemphyschem 2013
Özhan G, Sezgin E, Wehner D, Pfister AS, Kühl SJ, Kagermeier-Schenk B, Kühl M, Schwille P, Weidinger G
Lypd6 enhances Wnt/β-catenin signaling by promoting Lrp6 phosphorylation in raft plasma membrane domains.
Dev Cell. 2013 Aug 26;26(4):331–45
Dev Cell 2013
Lavrynenko O, Nedielkov R, Möller HM, Shevchenko A
Girard derivatization for LC-MS/MS profiling of endogenous ecdysteroids in Drosophila.
J Lipid Res. 2013 Aug;54(8):2265–72
J Lipid Res 2013
Ananthanarayanan V, Schattat M, Vogel SK, Krull A, Pavin N, Tolić-Nørrelykke IM
Dynein motion switches from diffusive to directed upon cortical anchoring.
Cell. 2013 Jun 20;153(7):1526–36
Cell 2013
Clark AG, Dierkes K, Paluch EK
Monitoring actin cortex thickness in live cells.
Biophys J. 2013 Aug 6;105(3):570–80
Biophys J 2013
Liu SY, Selck C, Friedrich B, Lutz R, Vila-Farré M, Dahl A, Brandl H, Lakshmanaperumal N, Henry I, Rink JC
Reactivating head regrowth in a regeneration-deficient planarian species.
Nature. 2013 Aug 1;500(7460):81–4
Nature 2013
Trushko A, Schäffer E, Howard J
The growth speed of microtubules with XMAP215-coated beads coupled to their ends is increased by tensile force.
Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14670–5
Proc Natl Acad Sci U S A 2013
Geyer VF, Jülicher F, Howard J, Friedrich BM
Cell-body rocking is a dominant mechanism for flagellar synchronization in a swimming alga.
Proc Natl Acad Sci U S A. 2013 Nov 5;110(45):18058–63
Proc Natl Acad Sci U S A 2013
Biro M, Romeo Y, Kroschwald S, Bovellan M, Boden A, Tcherkezian J, Roux PP, Charras G, Paluch EK
Cell cortex composition and homeostasis resolved by integrating proteomics and quantitative imaging.
Cytoskeleton (Hoboken). 2013 Oct 17
Cytoskeleton 2013
Coelho M, Dereli A, Haese A, Kühn S, Malinovska L, Desantis ME, Shorter J, Alberti S, Gross T, Tolić-Nørrelykke IM
Fission Yeast Does Not Age under Favorable Conditions, but Does So after Stress.
Curr Biol. 2013 Oct 7;23(19):1844–52
Curr Biol 2013
Gupta M, Brand M
Identification and Expression Analysis of Zebrafish Glypicans during Embryonic Development.
PLoS One. 2013 Nov 14;8(11):e80824
PLoS One 2013
Erkut C, Vasilj A, Boland S, Habermann B, Shevchenko A, Kurzchalia TV
Molecular Strategies of the Caenorhabditis elegans Dauer Larva to Survive Extreme Desiccation.
PLoS One. 2013 Dec 4;8(12):e82473
PLoS One 2013
Gerl MJ, Sampaio JL, Urban S, Kalvodova L, Verbavatz JM, Binnington B, Lindemann D, Lingwood CA, Shevchenko A, Schroeder C, Simons K
Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane.
J Cell Biol. 2012 Jan 23;196(2):213–21
J Cell Biol 2012
Ganz J, Kaslin J, Freudenreich D, Machate A, Geffarth M, Brand M
Subdivisions of the adult zebrafish subpallium by molecular marker analysis.
J Comp Neurol. 2012 Feb 15;520(3):633–55
J Comp Neurol 2012
Chakraborty D, Kappei D, Theis M, Nitzsche A, Ding L, Paszkowski-Rogacz M, Surendranath V, Berger N, Schulz H, Saar K, Hubner N, Buchholz F
Combined RNAi and localization for functionally dissecting long noncoding RNAs.
Nat Methods. 2012 Feb 12;9(4):360–2
Nat Methods 2012
Kelava I, Reillo I, Murayama AY, Kalinka AT, Stenzel D, Tomancak P, Matsuzaki F, Lebrand C, Sasaki E, Schwamborn JC, Okano H, Huttner WB, Borrell V
Abundant occurrence of basal radial glia in the subventricular zone of embryonic neocortex of a lissencephalic primate, the common marmoset Callithrix jacchus.
Cereb Cortex. 2012 Feb;22(2):469–81
Cereb Cortex 2012
Betaneli V, Petrov EP, Schwille P
The role of lipids in VDAC oligomerization.
Biophys J. 2012 Feb 8;102(3):523–31
Biophys J 2012
Sezgin E, Levental I, Grzybek M, Schwarzmann G, Mueller V, Honigmann A, Belov VN, Eggeling C, Coskun U, Simons K, Schwille P
Partitioning, diffusion, and ligand binding of raft lipid analogs in model and cellular plasma membranes.
Biochim Biophys Acta. 2012 Mar 17;1818(7):1777–1784
Biochim Biophys Acta 2012
Klose C, Surma MA, Gerl MJ, Meyenhofer F, Shevchenko A, Simons K
Flexibility of a eukaryotic lipidome – insights from yeast lipidomics.
PLoS One. 2012;7(4):e35063
PLoS One 2012
Aliee M, Röper JC, Landsberg KP, Pentzold C, Widmann TJ, Jülicher F, Dahmann
Physical mechanisms shaping the Drosophila dorsoventral compartment boundary.
C. Curr Biol. 2012 May 2
Curr Biol 2012
Winter JF, Höpfner S, Korn K, Farnung BO, Bradshaw CR, Marsico G, Volkmer M, Habermann B, Zerial M
Caenorhabditis elegans screen reveals role of PAR-5 in RAB-11-recycling endosome positioning and apicobasal cell polarity.
Nat Cell Biol. 2012 May 27
Nat Cell Biol 2012
Sezgin E, Kaiser HJ, Baumgart T, Schwille P, Simons K, Levental I
Elucidating membrane structure and protein behavior using giant plasma membrane vesicles.
Nat Protoc. 2012 May 3;7(6):1042–51
Nat Protoc 2012
Saalfeld S, Fetter R, Cardona A, Tomancak P
Elastic volume reconstruction from series of ultra-thin microscopy sections.
Nat Methods. 2012 Jun 10;9(7):717–20
Nat Methods 2012
Weber M, Huisken J
Omnidirectional microscopy.
Nat Methods. 2012 Jun 28;9(7):656–7
Nat Methods 2012
Palm W, Sampaio JL, Brankatschk M, Carvalho M, Mahmoud A, Shevchenko A, Eaton S
Lipoproteins in Drosophila melanogaster--assembly, function, and influence on tissue lipid composition.
PLoS Genet. 2012 Jul;8(7):e1002828
PLoS Genet 2012
Schröter C, Ares S, Morelli LG, Isakova A, Hens K, Soroldoni D, Gajewski M, Jülicher F, Maerkl SJ, Deplancke B, Oates AC
Topology and dynamics of the zebrafish segmentation clock core circuit.
PLoS Biol. 2012 Jul;10(7):e1001364
PLoS Biol 2012
Bormuth V, Nitzsche B, Ruhnow F, Mitra A, Storch M, Rammner B, Howard J, Diez S
The highly processive kinesin-8, Kip3, switches microtubule protofilaments with a bias toward the left.
Biophys J. 2012 Jul 3;103(1):L4–6
Biophys J 2012
Vasilj A, Gentzel M, Ueberham E, Gebhardt R, Shevchenko A
Tissue proteomics by one-dimensional gel electrophoresis combined with label-free protein quantification.
J Proteome Res. 2012 Jul 6;11(7):3680–9
J Proteome Res 2012
Fietz SA, Lachmann R, Brandl H, Kircher M, Samusik N, Schröder R, Lakshmanaperumal N, Henry I, Vogt J, Riehn A, Distler W, Nitsch R, Enard W, Pääbo S, Huttner WB
Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal.
Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11836–41
Proc Natl Acad Sci U S A 2012
Bieberstein NI, Oesterreich FC, Straube K, Neugebauer KM
First exon length controls active chromatin signatures and transcription.
Cell Rep. 2012 Jul 26;2(1):62–8
Cell Rep 2012
Carvalho M, Sampaio JL, Palm W, Brankatschk M, Eaton S, Shevchenko A
Effects of diet and development on the Drosophila lipidome.
Mol Syst Biol. 2012 Jul 31;8:600
Mol Syst Bio 2012
Malinovska L, Kroschwald S, Munder MC, Richter D, Alberti S
Molecular chaperones and stress-inducible protein-sorting factors coordinate the spatiotemporal distribution of protein aggregates.
Mol Biol Cell. 2012 Aug;23(16):3041–56
Mol Biol Cell 2012
Surma MA, Klose C, Simons K
Lipid-dependent protein sorting at the trans-Golgi network.
Biochim Biophys Acta. 2012 Aug;1821(8):1059–67
Biochim Biophys Acta 2012
Sezgin E, Schwille P
Model membrane platforms to study protein-membrane interactions.
Mol Membr Biol. 2012 Aug;29(5):144–54
Mol Membr Biol 2012
Arumugam S, Chwastek G, Fischer-Friedrich E, Ehrig C, Mönch I, Schwille P
Surface Topology Engineering of Membranes for the Mechanical Investigation of the Tubulin Homologue FtsZ.
Angew Chem Int Ed Engl. 2012 Aug 31
Angew Chem Int Ed Engl 2012
Kaufmann A, Mickoleit M, Weber M, Huisken J
Multilayer mounting enables long-term imaging of zebrafish development in a light sheet microscope.
Development. 2012 Sep;139(17):3242–7
Development 2012
Betaneli V, Worch R, Schwille P
Effect of temperature on the formation of liquid phase-separating giant unilamellar vesicles (GUV).
Chem Phys Lipids. 2012 Sep;165(6):630–7
Chem Phys Lipids 2012
Bergert M, Chandradoss SD, Desai RA, Paluch E
Cell mechanics control rapid transitions between blebs and lamellipodia during migration.
Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14434–9
Proc Natl Acad Sci U S A 2012
Okaz E, Argüello-Miranda O, Bogdanova A, Vinod PK, Lipp JJ, Markova Z, Zagoriy I, Novak B, Zachariae W
Meiotic prophase requires proteolysis of M phase regulators mediated by the meiosis-specific APC/CAma1.
Cell. 2012 Oct 26;151(3):603–18
Cell 2012
Behrndt M, Salbreux G, Campinho P, Hauschild R, Oswald F, Roensch J, Grill SW, Heisenberg CP
Forces driving epithelial spreading in zebrafish gastrulation.
Science. 2012 Oct 12;338(6104):257–60
Science 2012
Maître JL, Berthoumieux H, Krens SF, Salbreux G, Jülicher F, Paluch E, Heisenberg CP
Adhesion Functions in Cell Sorting by Mechanically Coupling the Cortices of Adhering Cells.
Science. 2012 Oct 12;338(6104):253–6
Science 2012
Rostovskaya M, Fu J, Obst M, Baer I, Weidlich S, Wang H, Smith AJ, Anastassiadis K, Stewart AF
Transposon-mediated BAC transgenesis in human ES cells.
Nucleic Acids Res. 2012 Oct 1;40(19):e150
Nucleic Acids Res 2012
Kragl M, Roensch K, Nüsslein I, Tazaki A, Taniguchi Y, Tarui H, Hayashi T, Agata K, Tanaka EM
Muscle and connective tissue progenitor populations show distinct Twist1 and Twist3 expression profiles during axolotl limb regeneration.
Dev Biol. 2012 Oct 24. pii: S0012–1606(12)00576–3
Dev Biol 2012
Pan-Montojo F, Schwarz M, Winkler C, Arnhold M, O'Sullivan GA, Pal A, Said J, Marsico G, Verbavatz JM, Rodrigo-Angulo M, Gille G, Funk RH, Reichmann H
Environmental toxins trigger PD-like progression via increased alpha-synuclein release from enteric neurons in mice.
Sci Rep. 2012;2:898
Sci Rep 2012
Kayserili MA, Gerrard DT, Tomancak P, Kalinka AT
An excess of gene expression divergence on the X chromosome in Drosophila embryos: implications for the faster-X hypothesis.
PLoS Genet. 2012;8(12):e1003200
PLoS Genet 2012
Rostovskaya M, Anastassiadis K
Differential expression of surface markers in mouse bone marrow mesenchymal stromal cell subpopulations with distinct lineage commitment.
PLoS One. 2012;7(12):e51221
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Coelho M, Tolić-Nørrelykke IM
Refreshed but vulnerable: yeast daughter cells are more sensitive to stress than young mothers.
Cell Cycle. 2011 Jan 1;10(1):16–7
Cell Cycle 2011
Riedel F, Vorkel D, Eaton S
Megalin-dependent yellow endocytosis restricts melanization in the Drosophila cuticle.
Development. 2011 Jan;138(1):149–58
Development 2011
Fietz SA, Huttner WB.,
Cortical progenitor expansion, self-renewal and neurogenesis-a polarized perspective.
Curr Opin Neurobiol. 2011 Feb;21(1):23–35
Curr Opin Neurobiol 2011
Spandl J, Lohmann D, Kuerschner L, Moessinger C, Thiele C.,
Ancient ubiquitous protein 1 (AUP1) localizes to lipid droplets and binds the E2 ubiquitin conjugase G2 (Ube2g2) via its G2 binding region.
J Biol Chem. 2011 Feb 18;286(7):5599–606
J Biol Chem 2011
Poulet C, Wettwer E, Christ T, Ravens U
Skeletal muscle stem cells propagated as myospheres display electrophysiological properties modulated by culture conditions.
J Mol Cell Cardiol. 2011 Feb;50(2):357–66
J Mol Cell Cardiol 2011
Ciotta G, Hofemeister H, Maresca M, Fu J, Sarov M, Anastassiadis K, Stewart AF
Recombineering BAC transgenes for protein tagging.
Methods. 2011 Feb;53(2):113–9
Methods 2011
Suckale J, Wendling O, Masjkur J, Jäger M, Münster C, Anastassiadis K, Stewart AF, Solimena M
PTBP1 is required for embryonic development before gastrulation.
PLoS One. 2011 Feb 17;6(2):e16992
PLoS One 2011
Sampaio JL, Gerl MJ, Klose C, Ejsing CS, Beug H, Simons K, Shevchenko A
Membrane lipidome of an epithelial cell line.
Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):1903–7
Proc Natl Acad Sci 2011
Fonseca AV, Corbeil D
The hematopoietic stem cell polarization and migration: A dynamic link between RhoA signaling pathway, microtubule network and ganglioside-based membrane microdomains.
Commun Integr Biol. 2011 Mar;4(2):201–4.G382
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Oswald A, Oates AC
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Genome Biol. 2011 Mar 29;12(3):107
Genome Biol 2011
Redemann S, Schloissnig S, Ernst S, Pozniakowsky A, Ayloo S, Hyman AA, Bringmann H
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Nat Methods. 2011 Mar;8(3):250–2
Nat Methods 2011
Jahnel M, Behrndt M, Jannasch A, Schäffer E, Grill SW
Measuring the complete force field of an optical trap.
Opt Lett. 2011 Apr 1;36(7):1260–2
Opt Lett 2011
Tomczak A, Teresa Pisabarro M
Identification of CCR2-binding features in Cytl1 by a CCL2-like chemokine model.
Proteins. 2011 Apr;79(4):1277–92
Proteins 2011
Roellig D, Morelli LG, Ares S, Jülicher F, Oates AC
SnapShot: The Segmentation Clock.
Cell. 2011 May 27;145(5):800–800
Cell 2011
Knopf F, Hammond C, Chekuru A, Kurth T, Hans S, Weber CW, Mahatma G, Fisher S, Brand M, Schulte-Merker S, Weidinger G
Bone Regenerates via Dedifferentiation of Osteoblasts in the Zebrafish Fin.
Dev Cell. 2011 May 17;20(5):713–24
Dev Cell 2011
Bauer N, Wilsch-Bräuninger M, Karbanová J, Fonseca AV, Strauss D, Freund D, Thiele C, Huttner WB, Bornhäuser M, Corbeil D
Haematopoietic stem cell differentiation promotes the release of prominin-1/CD133-containing membrane vesicles-a role of the endocytic-exocytic pathway.
EMBO Mol Med. 2011 May 18
EMBO Mol Med 2011
Lingwood D, Binnington B, Róg T, Vattulainen I, Grzybek M, Coskun U, Lingwood CA, Simons K
Cholesterol modulates glycolipid conformation and receptor activity.
Nat Chem Biol. 2011 May;7(5):260–2
Nat Chem Biol 2011
Loose M, Fischer-Friedrich E, Herold C, Kruse K, Schwille P
Min protein patterns emerge from rapid rebinding and membrane interaction of MinE.
Nat Struct Mol Biol. 2011 May;18(5):577–83
Nat Struct Mol Biol 2011
Nitzsche A, Paszkowski-Rogacz M, Matarese F, Janssen-Megens EM, Hubner NC, Schulz H, de Vries I, Ding L, Huebner N, Mann M, Stunnenberg HG, Buchholz F
RAD21 Cooperates with Pluripotency Transcription Factors in the Maintenance of Embryonic Stem Cell Identity.
PLoS One. 2011 May 12;6(5):e19470
PLoS One 2011
Clark AG, Paluch E
Mechanics and regulation of cell shape during the cell cycle.
Results Probl Cell Differ. 2011;53:31–73
Results Probl Cell Differ 2011
Surma MA, Klose C, Klemm RW, Ejsing CS, Simons K
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Traffic. 2011 May 17
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Arumugam S, Chwastek G, Schwille P
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Wiley Interdiscip Rev Syst Biol Med. 2011 May-Jun;3(3):269–80
WIRES SYST BIOL MED 2011
Loose M, Kruse K, Schwille P
Protein self-organization: lessons from the min system.
Annu Rev Biophys. 2011 Jun 9;40:315–36
Annu Rev Biophys 2011
Ohrt T, Staroske W, Mütze J, Crell K, Landthaler M, Schwille P
Fluorescence Cross-Correlation Spectroscopy Reveals Mechanistic Insights into the Effect of 2'-O-Methyl Modified siRNAs in Living Cells.
Biophys J. 2011 Jun 22;100(12):2981–90
Biophys J 2011
Moessinger C, Kuerschner L, Spandl J, Shevchenko A, Thiele C
Human lysophosphatidylcholine acyltransferases 1 and 2 are located in lipid droplets where they catalyze the formation of phosphatidylcholine.
J Biol Chem. 2011 Jun 17;286(24):21330–9
J Biol Chem 2011
Stamova S, Cartellieri M, Feldmann A, Bippes CC, Bartsch H, Wehner R, Schmitz M, von Bonin M, Bornhäuser M, Ehninger G, Rieber EP, Bachmann M
Simultaneous engagement of the activatory receptors NKG2D and CD3 for retargeting of effector cells to CD33-positive malignant cells.
Leukemia. 2011 Jun;25(6):1053–6
Leukemia 2011
Krastev DB, Slabicki M, Paszkowski-Rogacz M, Hubner NC, Junqueira M, Shevchenko A, Mann M, Neugebauer KM, Buchholz F
A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly.
Nat Cell Biol. 2011 Jun 5;13(7):809–18
Nat Cell Biol 2011
Oesterreich FC, Bieberstein N, Neugebauer KM
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Trends Cell Biol. 2011 Jun;21(6):328–35
Trends Cell Biol 2011
Chopin M, Chacón-Martínez CA, Jessberger R
Fine tuning of IRF-4 expression by SWAP-70 controls the initiation of plasma cell development.
Eur J Immunol. 2011 Jul 4
Eur J Immunol 2011
Zieris A, Chwalek K, Prokoph S, Levental KR, Welzel PB, Freudenberg U, Werner C
Dual independent delivery of pro-angiogenic growth factors from starPEG-heparin hydrogels.
J Control Release. 2011 Jul 6
J Control Release 2011
Mende S, Royer L, Herr A, Schmiedel J, Deschauer M, Klopstock T, Kostic VS, Schroeder M, Reichmann H, Storch A
Whole blood genome-wide expression profiling and network analysis suggest MELAS master regulators.
Neurol Res. 2011 Jul;33(6):638–55
Neurol Res 2011
Begasse ML, Hyman AA
The First Cell Cycle of the Caenorhabditis elegans Embryo: Spatial and Temporal Control of an Asymmetric Cell Division.
Results Probl Cell Differ. 2011;53:109–33
Results Probl Cell Differ 2011
Decker M, Jaensch S, Pozniakovsky A, Zinke A, O'Connell KF, Zachariae W, Myers E, Hyman AA
Limiting amounts of centrosome material set centrosome size in C. elegans embryos.
Curr Biol. 2011 Aug 9;21(15):1259–67
Curr Biol 2011
Erkut C, Penkov S, Khesbak H, Vorkel D, Verbavatz JM, Fahmy K, Kurzchalia TV
Trehalose renders the dauer larva of Caenorhabditis elegans resistant to extreme desiccation.
Curr Biol. 2011 Aug 9;21(15):1331–6
Curr Biol 2011
Bormuth V, Zörgibel F, Schäffer E, Howard J
Functional surface attachment in a sandwich geometry of GFP-labeled motor proteins.
Methods Mol Biol. 2011;778:11–8
Methods Mol Biol 2011
Sedzinski J, Biro M, Oswald A, Tinevez JY, Salbreux G, Paluch E,
Polar actomyosin contractility destabilizes the position of the cytokinetic furrow.
Nature. 2011 Aug 7;476(7361):462–6
Nature 2011
Weber M, Huisken J
Light sheet microscopy for real-time developmental biology.
Curr Opin Genet Dev. 2011 Oct;21(5):566–72
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Korten T, Nitzsche B, Gell C, Ruhnow F, Leduc C, Diez S
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Cell Cycle. 2011 Oct 15;10(20):3417–8
Cell Cycle 2011
Soroldoni D, Oates AC
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Curr Opin Genet Dev. 2011 Oct;21(5):600–5
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Chopin M, Chacón-Martínez CA, Jessberger R
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Eur J Immunol. 2011 Oct;41(10):3063–74
Eur J Immunol 2011
Ettinger AW, Wilsch-Bräuninger M, Marzesco AM, Bickle M, Lohmann A, Maliga Z, Karbanová J, Corbeil D, Hyman AA, Huttner WB
Proliferating versus differentiating stem and cancer cells exhibit distinct midbody-release behaviour.
Nat Commun. 2011 Oct 18;2:503
Nat Commun 2011
Kaiser HJ, Orłowski A, Róg T, Nyholm TK, Chai W, Feizi T, Lingwood D, Vattulainen I, Simons K
Lateral sorting in model membranes by cholesterol-mediated hydrophobic matching.
Proc Natl Acad Sci U S A. 2011 Oct 4;108(40):16628–33
Proc Natl Acad Sci 2011
Sezgin E, Schwille P
Fluorescence Techniques to Study Lipid Dynamics.
Cold Spring Harb Perspect Biol. 2011 Jun 13
CSH Perspect Biol 2011
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Annu Rev Cell Dev Biol. 2011 Nov 10;27:409–40
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Development. 2011 Nov;138(22):4831–41
Development 2011
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J Cell Sci. 2011 Nov 1;124(Pt 21):3715–25
J Cell Sci 2011
Kaiser HJ, Surma MA, Mayer F, Levental I, Grzybek M, Klemm RW, Da Cruz S, Meisinger C, Müller V, Simons K, Lingwood D
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J Biol Chem. 2011 Nov 25;286(47):40631–7
J Biol Chem 2011
Kagermeier-Schenk B, Wehner D, Ozhan-Kizil G, Yamamoto H, Li J, Kirchner K, Hoffmann C, Stern P, Kikuchi A, Schambony A, Weidinger G
Waif1/5T4 Inhibits Wnt/β-Catenin Signaling and Activates Noncanonical Wnt Pathways by Modifying LRP6 Subcellular Localization.
Dev Cell. 2011 Nov 17.
Dev Cell 2011
Korten T, Birnbaum W, Kuckling D, Diez S
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Nano Lett. 2012 Jan 11;12(1):348–53. Epub 2011 Dec 12
Nano Lett 2011
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EMBO J. 2011 Dec 13;31(4):788–804
EMBO J 2011
Surma MA, Klose C, Simons K
Lipid-dependent protein sorting at the trans-Golgi network.
Biochim Biophys Acta. 2011 Dec 31
Biochim Biophys Acta 2011
Kedrov A, Hellawell AM, Klosin A, Broadhurst RB, Kunji ER, Müller DJ
Probing the interactions of carboxy-atractyloside and atractyloside with the yeast mitochondrial ADP/ATP carrier.
Structure. 2010 Jan 13;18(1):39–46
Structure 2010
Nemtsas P, Wettwer E, Christ T, Weidinger G, Ravens U
Adult zebrafish heart as a model for human heart? An electrophysiological study.
J Mol Cell Cardiol. 2010 Jan;48(1):161–71
J Mol Cell Cardiol 2010
Marsico A, Scheubert K, Tuukkanen A, Henschel A, Winter C, Winnenburg R, Schroeder M
MeMotif: a database of linear motifs in alpha-helical transmembrane proteins.
Nucleic Acids Res. 2010 Jan;38(Database issue):D181–9
Nucleic Acids Res 2010
Strzelecka M, Oates AC, Neugebauer KM
Dynamic control of Cajal body number during zebrafish embryogenesis.
Nucleus. 2010 Jan;1(1):96–108
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Pan-Montojo F, Anichtchik O, Dening Y, Knels L, Pursche S, Jung R, Jackson S, Gille G, Spillantini MG, Reichmann H, Funk RH
Progression of Parkinson's disease pathology is reproduced by intragastric administration of rotenone in mice.
PLoS One. 2010 Jan 19;5(1):e8762
PLoS One 2010
Lingwood D, Simons K
Lipid rafts as a membrane-organizing principle.
Science. 2010 Jan 1;327(5961):46–50. Review
Science 2010
Attardo A, Fabel K, Krebs J, Haubensak W, Huttner WB, Kempermann G
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Cereb Cortex. 2010 Feb;20(2):304–14. Epub 2009 May 29
Cereb Cortex 2010
Greenan G, Brangwynne CP, Jaensch S, Gharakhani J, Jülicher F, Hyman AA
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Curr Biol. 2010 Feb 23;20(4):353–8
Curr Biol 2010
Meyer AK, Maisel M, Hermann A, Stirl K, Storch A
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J Neurol Sci. 2010 Feb 15;289(1–2):93–103. Review
J Neurol Sci 2010
Collinet C, Stöter M, Bradshaw CR, Samusik N, Rink JC, Kenski D, Habermann B, Buchholz F, Henschel R, Mueller MS, Nagel WE, Fava E, Kalaidzidis Y, Zerial M
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Nature. 2010 Mar 11;464(7286):243–9
Nature 2010
Marsico A, Henschel A, Winter C, Tuukkanen A, Vassilev B, Scheubert K, Schroeder M
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BMC Bioinformatics. 2010 Apr 26;11:204
BMC Bioinformatics 2010
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Cell polarity: which way to grow in an electric field?
Curr Biol. 2010 Apr 27;20(8):R355–6
Curr Biol 2010
Damaghi M, Bippes C, Köster S, Yildiz O, Mari SA, Kühlbrandt W, Muller DJ
pH-dependent interactions guide the folding and gate the transmembrane pore of the beta-barrel membrane protein OmpG.
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Nano Lett. 2010 Apr 14;10(4):1497–500
Nano Lett 2010
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Nat Commun. 2010 Apr 12;1:11.G390
Nat Commun 2010
Strzelecka M, Trowitzsch S, Weber G, Lührmann R, Oates AC, Neugebauer KM
Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis.
Nat Struct Mol Biol. 2010 Apr;17(4):403–9
Nat Struct Mol Biol 2010
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BMC Bioinformatics. 2010 May 17;11:254
BMC Bioinformatics 2010
Jaensch S, Decker M, Hyman AA, Myers EW
Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos.
Bioinformatics. 2010 Jun 15;26(12):i13–20
Bioinformatics 2010
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Bioinformatics. 2010 Jun 15;26(12):i57–63
Bioinformatics 2010
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Nat Methods. 2010 Jun;7(6):418–9
Nat Methods 2010
Fietz SA, Kelava I, Vogt J, Wilsch-Bräuninger M, Stenzel D, Fish JL, Corbeil D, Riehn A, Distler W, Nitsch R, Huttner WB
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Nat Neurosci. 2010 Jun;13(6):690–9
Nat Neurosci 2010
Słabicki M, Theis M, Krastev DB, Samsonov S, Mundwiller E, Junqueira M, Paszkowski-Rogacz M, Teyra J, Heninger AK, Poser I, Prieur F, Truchetto J, Confavreux C, Marelli C, Durr A, Camdessanche JP, Brice A, Shevchenko A, Pisabarro MT, Stevanin G, Buchholz F
A genome-scale DNA repair RNAi screen identifies SPG48 as a novel gene associated with hereditary spastic paraplegia.
PLoS Biol. 2010 Jun 29;8(6):e1000408
PLoS Biol 2010
Maresca M, Erler A, Fu J, Friedrich A, Zhang Y, Stewart AF
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BMC Mol Biol. 2010 Jul 29;11:54
BMC Mol Biol 2010
Herrgen L, Ares S, Morelli LG, Schröter C, Jülicher F, Oates AC
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Curr Biol. 2010 Jul 27;20(14):1244–53
Curr Biol 2010
Schröter C, Oates AC
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Curr Biol. 2010 Jul 27;20(14):1254–8
Curr Biol 2010
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Studying kinesin motors by optical 3D-nanometry in gliding motility assays.
Methods Cell Biol. 2010;95:247–71
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Pabis M, Neufeld N, Shav-Tal Y, Neugebauer KM
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Nucleus. 2010 Jul;1(5):412–421
Nucleus 2010
Zagoriy V, Matyash V, Kurzchalia T
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Chem Biodivers. 2010 Aug;7(8):2016–22
Chem Biodivers 2010
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Curr Opin Biotechnol. 2010 Aug;21(4):477–88
Curr Opin Biotechnol 2010
Kupinski AP, Müller-Reichert T, Eckmann CR
The Caenorhabditis elegans Ste20 kinase, GCK-3, is essential for postembryonic developmental timing and regulates meiotic chromosome segregation.
Dev Biol. 2010 Aug 15;344(2):758–71
Dev Biol 2010
Gloor Y, Schöne M, Habermann B, Ercan E, Beck M, Weselek G, Müller-Reichert T, Walch-Solimena C
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Eur J Cell Biol. 2010 Aug;89(8):575–83
Eur J Cell Biol 2010
Ganz J, Kaslin J, Hochmann S, Freudenreich D, Brand M
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Glia. 2010 Aug 15;58(11):1345–63
Glia 2010
Redemann S, Pecreaux J, Goehring NW, Khairy K, Stelzer EH, Hyman AA, Howard J
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PLoS One. 2010 Aug 20;5(8):e12301
PLoS One 2010
Schubert S, Knoch KP, Ouwendijk J, Mohammed S, Bodrov Y, Jäger M, Altkrüger A, Wegbrod C, Adams ME, Kim Y, Froehner SC, Jensen ON, Kalaidzidis Y, Solimena M
β2-Syntrophin is a Cdk5 substrate that restrains the motility of insulin secretory granules.
PLoS One. 2010 Sep 23;5(9):e12929
PLoS One 2010
Arunachalam M, Jayasurya K, Tomancak P, Ohler U
An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.
Bioinformatics. 2010 Sep 1;26(17):2109–15
Bioinformatics 2010
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Yeast lipids can phase-separate into micrometer-scale membrane domains.
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Mayer M, Depken M, Bois JS, Jülicher F, Grill SW
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Nature. 2010 Sep 30;467(7315):617–21
Nature 2010
Pulvers JN, Bryk J, Fish JL, Wilsch-Bräuninger M, Arai Y, Schreier D, Naumann R, Helppi J, Habermann B, Vogt J, Nitsch R, Tóth A, Enard W, Pääbo S, Huttner WB
Mutations in mouse Aspm (abnormal spindle-like microcephaly associated) cause not only microcephaly but also major defects in the germline.
Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16595–600
Proc Natl Acad Sci 2010
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Artif Organs 2010
Strilić B, Kucera T, Lammert E
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Cell Mol Life Sci. 2010 Oct;67(19):3209–18. Review
Cell Mol Life Sci 2010
Strilić B, Kucera T, Eglinger J, Hughes MR, McNagny KM, Tsukita S, Dejana E, Ferrara N, Lammert E
The molecular basis of vascular lumen formation in the developing mouse aorta.
Dev Cell. 2009 Oct;17(4):505–15
Dev Cell 2010
Chopin M, Quemeneur L, Ripich T, Jessberger R
SWAP-70 controls formation of the splenic marginal zone through regulating T1B-cell differentiation.
Eur J Immunol. 2010 Oct 5
Eur J Immunol 2010
Fonseca AV, Freund D, Bornhäuser M, Corbeil D
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Pan-Montojo FJ, Funk RH
Oral administration of rotenone using a gavage and image analysis of alpha-synuclein inclusions in the enteric nervous system.
J Vis Exp. 2010 Oct 26;(44). pii: 2123
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Carvalho L, Heisenberg CP
The yolk syncytial layer in early zebrafish development.
Trends Cell Biol. 2010 Oct;20(10):586–92. Review
Trends Cell Biol 2010
Suckale J, Solimena M
The insulin secretory granule as a signaling hub.
Trends Endocrinol Metab. 2010 Oct;21(10):599–609. Review
Trends Endocrinol Metab 2010
Quesada-Hernández E, Caneparo L, Schneider S, Winkler S, Liebling M, Fraser SE, Heisenberg CP
Stereotypical cell division orientation controls neural rod midline formation in zebrafish.
Curr Biol. 2010 Nov 9;20(21):1966–72
Curr Biol 2010
Strilić B, Eglinger J, Krieg M, Zeeb M, Axnick J, Babál P, Müller DJ, Lammert E
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Curr Biol. 2010 Nov 23;20(22):2003–9
Curr Biol 2010
Carvalho M, Schwudke D, Sampaio JL, Palm W, Riezman I, Dey G, Gupta GD, Mayor S, Riezman H, Shevchenko A, Kurzchalia TV, Eaton S
Survival strategies of a sterol auxotroph.
Development. 2010 Nov;137(21):3675–85
Development 2010
Carrillo Oesterreich F, Preibisch S, Neugebauer KM
Global analysis of nascent RNA reveals transcriptional pausing in terminal exons.
Mol Cell. 2010 Nov 24;40(4):571–81
Mol Cell 2010
Diz-Muñoz A, Krieg M, Bergert M, Ibarlucea-Benitez I, Muller DJ, Paluch E, Heisenberg CP
Control of directed cell migration in vivo by membrane-to-cortex attachment.
PLoS Biol. 2010 Nov 30;8(11):e1000544
PLoS Biol 2010
Penkov S, Mende F, Zagoriy V, Erkut C, Martin R, Pässler U, Schuhmann K, Schwudke D, Gruner M, Mäntler J, Reichert-Müller T, Shevchenko A, Knölker HJ, Kurzchalia TV
Maradolipids: diacyltrehalose glycolipids specific to dauer larva in Caenorhabditis elegans.
Angew Chem Int Ed Engl. 2010 Dec 3;49(49):9430–5
Angew Chem Int Ed 2010
Kawamura S, Colozo AT, Müller DJ, Park PS
Conservation of molecular interactions stabilizing bovine and mouse rhodopsin.
Biochemistry. 2010 Dec 14;49(49):10412–20
Biochemistry-US 2010
Damaghi M, Sapra KT, Köster S, Yildiz Ö, Kühlbrandt W, Muller DJ
Dual energy landscape: the functional state of the β-barrel outer membrane protein G molds its unfolding energy landscape.
Proteomics. 2010 Dec;10(23):4151–62
Proteomics 2010
Tuukkanen A, Huang B, Henschel A, Stewart F, Schroeder M
Structural modeling of histone methyltransferase complex Set1C from Saccharomyces cerevisiae using constraint-based docking.
Proteomics. 2010 Dec;10(23):4186–95
Proteomics 2010
Fierro FA, Brenner S, Oelschlaegel U, Jacobi A, Knoth H, Ehninger G, Illmer T, Bornhäuser M
Combining SDF-1/CXCR4 antagonism and chemotherapy in relapsed acute myeloid leukemia.
Leukemia. 2009 Feb;23(2):393–6
Leukemia 2009
Ejsing CS, Sampaio JL, Surendranath V, Duchoslav E, Ekroos K, Klemm RW, Simons K, Shevchenko A
Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry.
Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2136–41
Proc Natl Acad Sci 2009
Heckel T, Czupalla C, Expirto Santo AI, Anitei M, Sanchez-Fernandez MA, Mosch K, Krause E, Hoflack B
Src-dependent repression of ARF6 is required to maintain podosome-rich sealing zones in bone-digesting osteoclasts.
Proc Natl Acad Sci U S A. 2009 Feb 3;106(5):1451–6
Proc Natl Acad Sci 2009
Kanczkowski W, Zacharowski K, Wirth MP, Ehrhart-Bornstein M, Bornstein SR
Differential expression and action of Toll-like receptors in human adrenocortical cells.
Mol Cell Endocrinol. 2009 Mar 5;300(1–2):57–65
Mol Cell Endocrinol 2009
Süss C, Czupalla C, Winter C, Pursche T, Knoch KP, Schroeder M, Hoflack B, Solimena M
Rapid changes of mRNA-binding protein levels following glucose and 3-isobutyl-1-methylxanthine stimulation of insulinoma INS-1 cells.
Mol Cell Proteomics. 2009 Mar;8(3):393–408
Mol Cell Proteomics 2009
Carvalho L, Stühmer J, Bois JS, Kalaidzidis Y, Lecaudey V, Heisenberg CP
Control of convergent yolk syncytial layer nuclear movement in zebrafish.
Development. 2009 Apr;136(8):1305–15
Development 2009
Glaser S, Lubitz S, Loveland KL, Ohbo K, Robb L, Schwenk F, Seibler J, Roellig D, Kranz A, Anastassiadis K, Stewart AF
The histone 3 lysine 4 methyltransferase, Mll2, is only required briefly in development and spermatogenesis.
Epigenetics Chromatin. 2009 Apr 6;2(1):5
Epigenet Chromatin 2009
Schmid M, Küchler B, Eckmann CR
Two conserved regulatory cytoplasmic poly(A) polymerases, GLD-4 and GLD-2, regulate meiotic progression in C. elegans.
Genes Dev. 2009 Apr 1;23(7):824–36
Genes Dev 2009
Vogel SK, Pavin N, Maghelli N, Jülicher F, Tolić-Nørrelykke IM
Self-organization of dynein motors generates meiotic nuclear oscillations.
PLoS Biol. 2009 Apr 21;7(4):e1000087
PLoS Biol 2009
Kucera T, Strilić B, Regener K, Schubert M, Laudet V, Lammert E
Ancestral vascular lumen formation via basal cell surfaces.
PLoS One. 2009;4(1):e4132
PLoS One 2009
Demontis F, Dahmann C
Characterization of the Drosophila ortholog of the human Usher Syndrome type 1G protein sans.
PLoS One. 2009;4(3):e4753. Epub 2009 Mar 9
PLoS One 2009
Lingwood D, Schuck S, Ferguson C, Gerl MJ, Simons K
Generation of cubic membranes by controlled homotypic interaction of membrane proteins in the endoplasmic reticulum.
J Biol Chem. 2009 May 1;284(18):12041–8
J Biol Chem 2009
Klemm RW, Ejsing CS, Surma MA, Kaiser HJ, Gerl MJ, Sampaio JL, de Robillard Q, Ferguson C, Proszynski TJ, Shevchenko A, Simons K
Segregation of sphingolipids and sterols during formation of secretory vesicles at the trans-Golgi network.
J Cell Biol. 2009 May 18;185(4):601–12
J Cell Biol 2009
Widmann TJ, Dahmann C
Dpp signaling promotes the cuboidal-to-columnar shape transition of Drosophila wing disc epithelia by regulating Rho1.
J Cell Sci. 2009 May 1;122(Pt 9):1362–73
J Cell Sci 2009
Kalvodova L, Sampaio JL, Cordo S, Ejsing CS, Shevchenko A, Simons K
The lipidomes of vesicular stomatitis virus, semliki forest virus, and the host plasma membrane analyzed by quantitative shotgun mass spectrometry.
J Virol. 2009 Aug;83(16):7996–8003
J Virol 2009
Benenati G, Penkov S, Müller-Reichert T, Entchev EV, Kurzchalia TV
Two cytochrome P450s in Caenorhabditis elegans are essential for the organization of eggshell, correct execution of meiosis and the polarization of embryo.
Mech Dev. 2009 May-Jun;126(5–6):382–93
Mech Develop 2009
Rybarska A, Harterink M, Jedamzik B, Kupinski AP, Schmid M, Eckmann CR
GLS-1, a novel P granule component, modulates a network of conserved RNA regulators to influence germ cell fate decisions.
PLoS Genet. 2009 May;5(5):e1000494
PLoS Genet 2009
Preibisch S, Saalfeld S, Tomancak P
Globally optimal stitching of tiled 3D microscopic image acquisitions.
Bioinformatics. 2009 Jun 1;25(11):1463–5
Bioinformatics 2009
Hannich JT, Entchev EV, Mende F, Boytchev H, Martin R, Zagoriy V, Theumer G, Riezman I, Riezman H, Knölker HJ, Kurzchalia TV
Methylation of the sterol nucleus by STRM-1 regulates dauer larva formation in Caenorhabditis elegans.
Dev Cell. 2009 Jun;16(6):833–43
Dev Cell 2009
Pulvers JN, Huttner WB
Brca1 is required for embryonic development of the mouse cerebral cortex to normal size by preventing apoptosis of early neural progenitors.
Development. 2009 Jun;136(11):1859–68
Development 2009
Fink G, Hajdo L, Skowronek KJ, Reuther C, Kasprzak AA, Diez S
The mitotic kinesin-14 Ncd drives directional microtubule-microtubule sliding.
Nat Cell Biol. 2009 Jun;11(6):717–23
Nat Cell Biol 2009
Ejsmont RK, Sarov M, Winkler S, Lipinski KA, Tomancak P
A toolkit for high-throughput, cross-species gene engineering in Drosophila.
Nat Methods. 2009 Jun;6(6):435–7
Nat Methods 2009
Fei JF, Huttner WB
Nonselective sister chromatid segregation in mouse embryonic neocortical precursor cells.
Cereb Cortex. 2009 Jul;19 Suppl 1:i49–54
Cereb Cortex 2009
Ugarte F, Ryser M, Thieme S, Fierro FA, Navratiel K, Bornhäuser M, Brenner S
Notch signaling enhances osteogenic differentiation while inhibiting adipogenesis in primary human bone marrow stromal cells.
Exp Hematol. 2009 Jul;37(7):867–875.e1
Exp Hematol 2009
Carvalho L, Heisenberg CP
Imaging zebrafish embryos by two-photon excitation time-lapse microscopy.
Methods Mol Biol. 2009;546:273–87
Methods Mol Biol 2009
Herrgen L, Schröter C, Bajard L, Oates AC
Multiple embryo time-lapse imaging of zebrafish development.
Methods Mol Biol. 2009;546:243–54
Methods Mol Biol 2009
Soroldoni D, Hogan BM, Oates AC
Simple and efficient transgenesis with meganuclease constructs in zebrafish.
Methods Mol Biol. 2009;546:117–30
Methods Mol Biol 2009
Kragl M, Knapp D, Nacu E, Khattak S, Maden M, Epperlein HH, Tanaka EM
Cells keep a memory of their tissue origin during axolotl limb regeneration.
Nature. 2009 Jul 2;460(7251):60–5
Nature 2009
Kittler R, Pelletier L, Buchholz F
Systems biology of mammalian cell division.
Cell Cycle. 2008 Jul 15;7(14):2123–8. Epub 2008 May 21. Review
Cell Cycle 2009
Saalfeld S, Cardona A, Hartenstein V, Tomancák P
CATMAID: collaborative annotation toolkit for massive amounts of image data.
Bioinformatics. 2009 Aug 1;25(15):1984–6
Bioinformatics 2009
Winnenburg R, Plake C, Schroeder M
Improved mutation tagging with gene identifiers applied to membrane protein stability prediction.
BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S3
BMC Bioinformatics 2009
Kragl M, Tanaka EM
Axolotl (Ambystoma mexicanum) limb and tail amputation.
Cold Spring Harb Protoc. 2009 Aug;2009(8):pdb.prot5267
Cold Spring Harb Protoc 2009
Kragl M, Tanaka EM
Grafting axolotl (Ambystoma mexicanum) limb skin and cartilage from GFP+ donors to normal hosts.
Cold Spring Harb Protoc. 2009 Aug;2009(8):pdb.prot5266
Cold Spring Harb Protoc 2009
Nacu E, Knapp D, Tanaka EM, Epperlein HH
Axolotl (Ambystoma mexicanum) embryonic transplantation methods.
Cold Spring Harb Protoc. 2009 Aug;2009(8):pdb.prot5265
Cold Spring Harb Protoc 2009
Erler A, Wegmann S, Elie-Caille C, Bradshaw CR, Maresca M, Seidel R, Habermann B, Muller DJ, Stewart AF
Conformational adaptability of Redbeta during DNA annealing and implications for its structural relationship with Rad52.
J Mol Biol. 2009 Aug 21;391(3):586–98
J Mol Biol 2009
Bormuth V, Varga V, Howard J, Schäffer E
Protein friction limits diffusive and directed movements of kinesin motors on microtubules.
Science. 2009 Aug 14;325(5942):870–3
Science 2009
Sabolek M, Baumann B, Heinrich M, Meyer AK, Herborg A, Liebau S, Maisel M, Hermann A, Ventz K, Schwarz J, Wirth T, Storch A
Initiation of dopaminergic differentiation of Nurr1(-) mesencephalic precursor cells depends on activation of multiple mitogen-activated protein kinase pathways.
Stem Cells. 2009 Aug;27(8):2009–21
Stem Cells 2009
Varga V, Leduc C, Bormuth V, Diez S, Howard J
Kinesin-8 motors act cooperatively to mediate length-dependent microtubule depolymerization.
Cell. 2009 Sep 18;138(6):1174–83
Cell 2009
Yu SR, Burkhardt M, Nowak M, Ries J, Petrásek Z, Scholpp S, Schwille P, Brand M
Fgf8 morphogen gradient forms by a source-sink mechanism with freely diffusing molecules.
Nature. 2009 Sep 24;461(7263):533–6
Nature 2009
Kaiser HJ, Lingwood D, Levental I, Sampaio JL, Kalvodova L, Rajendran L, Simons K
Order of lipid phases in model and plasma membranes.
Proc Natl Acad Sci U S A. 2009 Sep 29;106(39):16645–50
Proc Natl Acad Sci 2009
Schenk J, Wilsch-Bräuninger M, Calegari F, Huttner WB
Myosin II is required for interkinetic nuclear migration of neural progenitors.
Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16487–92
Proc Natl Acad Sci 2009
Lingwood D, Schuck S, Ferguson C, Gerl M, Simons K
Morphological homeostasis by autophagy.
Autophagy. 2009 Oct;5(7):1039–40
Autophagy 2009
Lingwood D, Kaiser HJ, Levental I, Simons K
Lipid rafts as functional heterogeneity in cell membranes.
Biochem Soc Trans. 2009 Oct;37(Pt 5):955–60
Biochem Soc Trans 2009
Jedamzik B, Eckmann CR
Analysis of RNA-protein complexes by RNA coimmunoprecipitation and RT-PCR analysis from Caenorhabditis elegans.
Cold Spring Harb Protoc. 2009 Oct;2009(10):pdb.prot5300
Cold Spring Harb Protoc 2009
Jedamzik B, Eckmann CR
Analysis of in vivo protein complexes by coimmunoprecipitation from Caenorhabditis elegans.
Cold Spring Harb Protoc. 2009 Oct;2009(10):pdb.prot5299
Cold Spring Harb Protoc 2009
Widmann TJ, Dahmann C
Wingless signaling and the control of cell shape in Drosophila wing imaginal discs.
Dev Biol. 2009 Oct 1;334(1):161–73
Dev Biol 2009
Loose M, Schwille P
Biomimetic membrane systems to study cellular organization.
J Struct Biol. 2009 Oct;168(1):143–51
J Struct Biol 2009
Chung KF, Sicard F, Vukicevic V, Hermann A, Storch A, Huttner WB, Bornstein SR, Ehrhart-Bornstein M
Isolation of neural crest derived chromaffin progenitors from adult adrenal medulla.
Stem Cells. 2009 Oct;27(10):2602–13
Stem Cells 2009
Keller H, Lorizate M, Schwille P
PI(4,5)P2 degradation promotes the formation of cytoskeleton-free model membrane systems.
Chemphyschem. 2009 Nov 9;10(16):2805–12
Chemphyschem 2009
Yesil P, Michel M, Chwalek K, Pedack S, Jany C, Ludwig B, Bornstein SR, Lammert E
A new collagenase blend increases the number of islets isolated from mouse pancreas.
Islets. 2009 Nov-Dec;1(3):185–90
Islets 2009
Spandl J, White DJ, Peychl J, Thiele C
Live cell multicolor imaging of lipid droplets with a new dye, LD540.
Traffic. 2009 Nov;10(11):1579–84
Traffic 2009
Landsberg KP, Farhadifar R, Ranft J, Umetsu D, Widmann TJ, Bittig T, Said A, Jülicher F, Dahmann C
Increased cell bond tension governs cell sorting at the Drosophila anteroposterior compartment boundary.
Curr Biol. 2009 Dec 1;19(22):1950–5
Curr Biol 2009
Khaliullina H, Panáková D, Eugster C, Riedel F, Carvalho M, Eaton S
Patched regulates Smoothened trafficking using lipoprotein-derived lipids.
Development. 2009 Dec;136(24):4111–21
Development 2009
Kamal MM, Mills D, Grzybek M, Howard J
Measurement of the membrane curvature preference of phospholipids reveals only weak coupling between lipid shape and leaflet curvature.
Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22245–50
Proc Natl Acad Sci 2009
Koch S, Jacobi A, Ryser M, Ehninger G, Thiede C
Abnormal localization and accumulation of FLT3-ITD, a mutant receptor tyrosine kinase involved in leukemogenesis.
Cells Tissues Organs. 2008;188(1–2):225–35
Cells Tissues Organs 2008
Schötz EM, Burdine RD, Jülicher F, Steinberg MS, Heisenberg CP, Foty RA
Quantitative differences in tissue surface tension influence zebrafish germ layer positioning.
HFSP J. 2008 Feb;2(1):42–56
HFSP J 2008
Klyszejko AL, Shastri S, Mari SA, Grubmüller H, Muller DJ, Glaubitz C
Folding and assembly of proteorhodopsin.
J Mol Biol. 2008 Feb 8;376(1):35–41
J Mol Biol 2008
Schröter C, Herrgen L, Cardona A, Brouhard GJ, Feldman B, Oates AC
Dynamics of zebrafish somitogenesis.
Dev Dyn. 2008 Mar;237(3):545–53
Dev Dynam 2008
Demmel L, Beck M, Klose C, Schlaitz AL, Gloor Y, Hsu PP, Havlis J, Shevchenko A, Krause E, Kalaidzidis Y, Walch-Solimena C
Nucleocytoplasmic shuttling of the Golgi phosphatidylinositol 4-kinase Pik1 is regulated by 14–3-3 proteins and coordinates Golgi function with cell growth.
Mol Biol Cell. 2008 Mar;19(3):1046–61
Mol Biol Cell 2008
Kuerschner L, Moessinger C, Thiele C
Imaging of lipid biosynthesis: how a neutral lipid enters lipid droplets.
Traffic. 2008 Mar;9(3):338–52
Traffic 2008
Buffa L, Fuchs E, Pietropaolo M, Barr F, Solimena M
ICA69 is a novel Rab2 effector regulating ER-Golgi trafficking in insulinoma cells.
Eur J Cell Biol. 2008 Apr;87(4):197–209
Eur J Cell Biol 2008
Fierro FA, Taubenberger A, Puech PH, Ehninger G, Bornhauser M, Muller DJ, Illmer T
BCR/ABL expression of myeloid progenitors increases beta1-integrin mediated adhesion to stromal cells.
J Mol Biol. 2008 Apr 4;377(4):1082–93. PMID: 18313694 [PubMed – indexed for MEDLINE]
J Mol Biol 2008
Suckale J, Solimena M
Pancreas islets in metabolic signaling--focus on the beta-cell.
Front Biosci. 2008 May 1;13:7156–71. Review
Front Biosci-Landmrk 2008
Demmel L, Gravert M, Ercan E, Habermann B, Müller-Reichert T, Kukhtina V, Haucke V, Baust T, Sohrmann M, Kalaidzidis Y, Klose C, Beck M, Peter M, Walch-Solimena C
The clathrin adaptor Gga2p is a phosphatidylinositol 4-phosphate effector at the Golgi exit.
Mol Biol Cell. 2008 May;19(5):1991–2002
Mol Biol Cell 2008
Loose M, Fischer-Friedrich E, Ries J, Kruse K, Schwille P
Spatial regulators for bacterial cell division self-organize into surface waves in vitro.
Science. 2008 May 9;320(5877):789–92
Science 2008
Sapra KT, Damaghi M, Köster S, Yildiz O, Kühlbrandt W, Muller DJ
One beta hairpin after the other: exploring mechanical unfolding pathways of the transmembrane beta-barrel protein OmpG.
Angew Chem Int Ed Engl. 2009;48(44):8306–8
Angew Chem Int Ed 2008
Ohrt T, Schwille P
siRNA modifications and sub-cellular localization: a question of intracellular transport?
Curr Pharm Des. 2008;14(34):3674–85. Review
Curr Pharm Design 2008
Kanczkowski W, Ziegler CG, Zacharowski K, Bornstein SR
Toll-like receptors in endocrine disease and diabetes.
Neuroimmunomodulation. 2008;15(1):54–60
Neuroimmunomodulation 2008
Lingwood D, Ries J, Schwille P, Simons K
Plasma membranes are poised for activation of raft phase coalescence at physiological temperature.
Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10005–10
Proc Natl Acad Sci 2008
Junqueira M, Spirin V, Santana Balbuena T, Waridel P, Surendranath V, Kryukov G, Adzhubei I, Thomas H, Sunyaev S, Shevchenko A
Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification.
J Proteome Res. 2008 Aug;7(8):3382–95
J Proteome Res 2008
Junqueira M, Spirin V, Balbuena TS, Thomas H, Adzhubei I, Sunyaev S, Shevchenko A
Protein identification pipeline for the homology-driven proteomics.
J Proteomics. 2008 Aug 21;71(3):346–56
J Proteomics 2008
Cisneros DA, Oberbarnscheidt L, Pannier A, Klare JP, Helenius J, Engelhard M, Oesterhelt F, Muller DJ
Transducer binding establishes localized interactions to tune sensory rhodopsin II.
Structure. 2008 Aug 6;16(8):1206–13
Structure 2008
Fonseca AV, Bauer N, Corbeil D
The stem cell marker CD133 meets the endosomal compartment--new insights into the cell division of hematopoietic stem cells.
Blood Cells Mol Dis. 2008 Sep-Oct;41(2):194–5
Blood Cells Mol Dis 2008
Bechstedt S, Howard J
Hearing mechanics: a fly in your ear.
Curr Biol. 2008 Sep 23;18(18):R869–70
Curr Biol 2008
Süss C, Solimena M
Proteomic profiling of beta-cells using a classical approach – two-dimensional gel electrophoresis.
Exp Clin Endocrinol Diabetes. 2008 Sep;116 Suppl 1:S13–20. Review
Exp Clin Endocrinol Diabetes 2008
Fish JL, Dehay C, Kennedy H, Huttner WB
Making bigger brains-the evolution of neural-progenitor-cell division.
J Cell Sci. 2008 Sep 1;121(Pt 17):2783–93. Review
J Cell Sci 2008
Korten T, Diez S
Setting up roadblocks for kinesin-1: mechanism for the selective speed control of cargo carrying microtubules.
Lab Chip. 2008 Sep;8(9):1441–7
Lab Chip 2008
Nitzsche B, Ruhnow F, Diez S
Quantum-dot-assisted characterization of microtubule rotations during cargo transport.
Nat Nanotechnol. 2008 Sep;3(9):552–6
Nat Nanotechnol 2008
Bormuth V, Jannasch A, Ander M, van Kats CM, van Blaaderen A, Howard J, Schäffer E
Optical trapping of coated microspheres.
Opt Express. 2008 Sep 1;16(18):13831–44
Opt Express 2008
Sanchez-Fernandez MA, Gallois A, Riedl T, Jurdic P, Hoflack B
Osteoclasts control osteoblast chemotaxis via PDGF-BB/PDGF receptor beta signaling.
PLoS One. 2008;3(10):e3537
PLoS One 2008
Winnenburg R, Wächter T, Plake C, Doms A, Schroeder M
Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?
Brief Bioinform. 2008 Nov;9(6):466–78. Review
Brief Bioinform 2008
Matos J, Lipp JJ, Bogdanova A, Guillot S, Okaz E, Junqueira M, Shevchenko A, Zachariae W
Dbf4-dependent CDC7 kinase links DNA replication to the segregation of homologous chromosomes in meiosis I.
Cell. 2008 Nov 14;135(4):662–78
Cell 2008
Kragl M, Knapp D, Nacu E, Khattak S, Schnapp E, Epperlein HH, Tanaka EM
Novel insights into the flexibility of cell and positional identity during urodele limb regeneration.
Cold Spring Harb Symp Quant Biol. 2008;73:583–92. Review
Cold Spring Harb Symp Quant Biol 2008
Grimard V, Massier J, Richter D, Schwudke D, Kalaidzidis Y, Fava E, Hermetter A, Thiele C
siRNA screening reveals JNK2 as an evolutionary conserved regulator of triglyceride homeostasis.
J Lipid Res. 2008 Nov;49(11):2427–40
J Lipid Res 2008
Ohrt T, Mütze J, Staroske W, Weinmann L, Höck J, Crell K, Meister G, Schwille P
Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells.
Nucleic Acids Res. 2008 Nov;36(20):6439–49
Nucleic Acids Res 2008
Bauer N, Fonseca AV, Florek M, Freund D, Jászai J, Bornhäuser M, Fargeas CA, Corbeil D
New insights into the cell biology of hematopoietic progenitors by studying prominin-1 (CD133).
Cells Tissues Organs. 2008;188(1–2):127–38. Review
Cells Tissues Organs 2008
Crevenna AH, Madathil S, Cohen DN, Wagenbach M, Fahmy K, Howard J
Secondary structure and compliance of a predicted flexible domain in kinesin-1 necessary for cooperation of motors.
Biophys J. 2008 Dec;95(11):5216–27. Epub 2008 Sep 5
Biophys J 2008
Marsico A, Labudde D, Sapra T, Muller DJ, Schroeder M
A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy.
Bioinformatics. 2007 Jan 15;23(2):e231–6
Bioinformatics 2007
Schlaitz AL, Srayko M, Dammermann A, Quintin S, Wielsch N, MacLeod I, de Robillard Q, Zinke A, Yates JR 3rd, Müller-Reichert T, Shevchenko A, Oegema K, Hyman AA
The C. elegans RSA complex localizes protein phosphatase 2A to centrosomes and regulates mitotic spindle assembly.
Cell. 2007 Jan 12;128(1):115–27
Cell 2007
Nikolova G, Strilic B, Lammert E
The vascular niche and its basement membrane.
Trends Cell Biol. 2007 Jan;17(1):19–25
Trends Cell Biol 2007
Bringmann H, Cowan CR, Kong J, Hyman AA
LET-99, GOA-1/GPA-16, and GPR-1/2 are required for aster-positioned cytokinesis.
Curr Biol. 2007 Jan 23;17(2):185–91. Epub 2006 Dec 28
Curr Biol 2007
Lingwood D, Simons K
Detergent resistance as a tool in membrane research.
Nat Protoc. 2007;2(9):2159–65
Nat Protoc 2007
Vogel SK, Raabe I, Dereli A, Maghelli N, Tolić-Nørrelykke I
Interphase microtubules determine the initial alignment of the mitotic spindle.
Curr Biol. 2007 Mar 6;17(5):438–44
Curr Biol 2007
Mortiboys HJ, Schaefer J, Reichmann H, Jackson S
Mitochondrial dysfunction in Parkinson's disease--revisited.
Neurol Neurochir Pol. 2007 Mar-Apr;41(2):150–9
Neurol Neurochir Pol 2007
Bormuth V, Howard J, Schäffer E
LED illumination for video-enhanced DIC imaging of single microtubules.
J Microsc. 2007 Apr;226(Pt 1):1–5
J Microsc 2007
Kittler R, Surendranath V, Heninger AK, Slabicki M, Theis M, Putz G, Franke K, Caldarelli A, Grabner H, Kozak K, Wagner J, Rees E, Korn B, Frenzel C, Sachse C, Sönnichsen B, Guo J, Schelter J, Burchard J, Linsley PS, Jackson AL, Habermann B, Buchholz F
Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies.
Nat Methods. 2007 Apr;4(4):337–44
Nat Methods 2007
Fierro F, Illmer T, Jing D, Schleyer E, Ehninger G, Boxberger S, Bornhäuser M
Inhibition of platelet-derived growth factor receptorbeta by imatinib mesylate suppresses proliferation and alters differentiation of human mesenchymal stem cells in vitro.
Cell Prolif. 2007 Jun;40(3):355–66. PMID: 17531080 [PubMed – indexed for MEDLINE]
Cell Proliferat 2007
Kanczkowski W, Morawietz H, Ziegler CG, Funk RH, Schmitz G, Zacharowski K, Mohn CE, Ehrhart-Bornstein M, Bornstein SR
Pam3CSK4 and LTA-TLRs ligands associated with microdomains induce IL8 production in human adrenocortical cancer cells.
Horm Metab Res. 2007 Jun;39(6):457–60
Horm Metab Res 2007
Cisneros DA, Friedrichs J, Taubenberger A, Franz CM, Muller DJ
Creating ultrathin nanoscopic collagen matrices for biological and biotechnological applications.
Small. 2007 Jun;3(6):956–63
Small 2007
Pulvers JN, Schenk J, Arai Y, Fei JF, Saito K, Huttner WB
On the origin of neurons.
Genome Biol. 2007;8(7):311
Genome Biol 2007
Kucera T, Eglinger J, Strilić B, Lammert E
Vascular lumen formation from a cell biological perspective.
Novartis Found Symp. 2007;283:46–56; discussion 56–60, 238–41
Novartis Found Symp 2007
Listerman I, Bledau AS, Grishina I, Neugebauer KM
Extragenic accumulation of RNA polymerase II enhances transcription by RNA polymerase III.
PLoS Genet. 2007 Nov;3(11):e212
PLoS Genet 2007
Farhadifar R, Röper JC, Aigouy B, Eaton S, Jülicher F
The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packing.
Curr Biol. 2007 Dec 18;17(24):2095–104
Curr Biol 2007
Mende S, Koch R, Schmiedel J, Reichmann H, Storch A
Association of mitochondrial disorders with lymphoid malignancies.
Mitochondrion. 2007 Dec;7(6):401–3
Mitochondrion 2007
Kittler R, Pelletier L, Heninger AK, Slabicki M, Theis M, Miroslaw L, Poser I, Lawo S, Grabner H, Kozak K, Wagner J, Surendranath V, Richter C, Bowen W, Jackson AL, Habermann B, Hyman AA, Buchholz F
Genome-scale RNAi profiling of cell division in human tissue culture cells.
Nat Cell Biol. 2007 Dec;9(12):1401–12
Nat Cell Biol 2007
Link V, Shevchenko A, Heisenberg CP
Proteomics of early zebrafish embryos.
BMC Dev Biol. 2006 Jan 13;6:1
BMC Dev Biol 2006
Kedrov A, Janovjak H, Ziegler C, Kuhlbrandt W, Muller DJ
Observing folding pathways and kinetics of a single sodium-proton antiporter from Escherichia coli.
J Mol Biol. 2006 Jan 6;355(1):2–8. Epub 2005 Nov 8
J Mol Biol 2006
Sapra KT, Besir H, Oesterhelt D, Muller DJ
Characterizing molecular interactions in different bacteriorhodopsin assemblies by single-molecule force spectroscopy.
J Mol Biol. 2006 Jan 27;355(4):640–50. Epub 2005 Nov 17
J Mol Biol 2006
Meder D, Moreno MJ, Verkade P, Vaz WL, Simons K
Phase coexistence and connectivity in the apical membrane of polarized epithelial cells.
Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):329–34. Epub 2006 Jan 3
Proc Natl Acad Sci 2006
Sobkow L, Epperlein HH, Herklotz S, Straube WL, Tanaka EM
A germline GFP transgenic axolotl and its use to track cell fate: dual origin of the fin mesenchyme during development and the fate of blood cells during regeneration.
Dev Biol. 2006 Feb 15;290(2):386–97. Epub 2006 Jan 4
Dev Biol 2006
Baust T, Czupalla C, Krause E, Bourel-Bonnet L, Hoflack B
Proteomic analysis of adaptor protein 1A coats selectively assembled on liposomes.
Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3159–64. Epub 2006 Feb 21
Proc Natl Acad Sci 2006
Ejsing CS, Sampaio JL, Surendranath V, Duchoslav E, Ekroos K, Klemm RW, Simons K, Shevchenko A
Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry.
Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2136–41. Epub 2009 Jan 27
Proc Natl Acad Sci 2006
Nikolova G, Jabs N, Konstantinova I, Domogatskaya A, Tryggvason K, Sorokin L, Fässler R, Gu G, Gerber HP, Ferrara N, Melton DA, Lammert E
The vascular basement membrane: a niche for insulin gene expression and Beta cell proliferation.
Dev Cell. 2006 Mar;10(3):397–405
Dev Cell 2006
Schuck S, Simons K
Controversy fuels trafficking of GPI-anchored proteins.
J Cell Biol. 2006 Mar 27;172(7):963–5
J Cell Biol 2006
Ejsing CS, Moehring T, Bahr U, Duchoslav E, Karas M, Simons K, Shevchenko A
Collision-induced dissociation pathways of yeast sphingolipids and their molecular profiling in total lipid extracts: a study by quadrupole TOF and linear ion trap-orbitrap mass spectrometry.
J Mass Spectrom. 2006 Mar;41(3):372–89
J Mass Spectrom 2006
Kedrov A, Müller DJ
Characterizing folding, structure, molecular interactions and ligand gated activation of single sodium/proton antiporters.
Naunyn Schmiedebergs Arch Pharmacol. 2006 Mar;372(6):400–12. Epub 2006 Mar 17. Review
Naunyn Schmiedebergs Arch Pharmacol 2006
Ohrt T, Merkle D, Birkenfeld K, Echeverri CJ, Schwille P
In situ fluorescence analysis demonstrates active siRNA exclusion from the nucleus by Exportin 5.
Nucleic Acids Res. 2006 Mar 6;34(5):1369–80. Print 2006
Nucleic Acids Res 2006
Dudu V, Bittig T, Entchev E, Kicheva A, Jülicher F, González-Gaitán M
Postsynaptic mad signaling at the Drosophila neuromuscular junction.
Curr Biol. 2006 Apr 4;16(7):625–35. Erratum in: Curr Biol. 2006 Jun 20;16(12):1256
Curr Biol 2006
Langenberg T, Dracz T, Oates AC, Heisenberg CP, Brand M
Analysis and visualization of cell movement in the developing zebrafish brain.
Dev Dyn. 2006 Apr;235(4):928–33
Dev Dynam 2006
Glaser S, Schaft J, Lubitz S, Vintersten K, van der Hoeven F, Tufteland KR, Aasland R, Anastassiadis K, Ang SL, Stewart AF
Multiple epigenetic maintenance factors implicated by the loss of Mll2 in mouse development.
Development. 2006 Apr;133(8):1423–32. Epub 2006 Mar 15
Development 2006
Cisneros DA, Muller DJ, Daud SM, Lakey JH
An approach to prepare membrane proteins for single-molecule imaging.
Angew Chem Int Ed Engl. 2006 May 12;45(20):3252–6. No abstract available
Angew Chem Int Ed 2006
Cunha AC, Weigle B, Kiessling A, Bachmann M, Rieber EP
Tissue-specificity of prostate specific antigens: comparative analysis of transcript levels in prostate and non-prostatic tissues.
Cancer Lett. 2006 May 18;236(2):229–38. Epub 2005 Jul 19
Cancer Lett 2006
Trajkovski M, Mziaut H, Schwarz PE, Solimena M
Genes of type 2 diabetes in beta cells.
Endocrinol Metab Clin North Am. 2006 Jun;35(2):357–69, x. Review
Endocrinol Metab Clin 2006
Link V, Carvalho L, Castanon I, Stockinger P, Shevchenko A, Heisenberg CP
Identification of regulators of germ layer morphogenesis using proteomics in zebrafish.
J Cell Sci. 2006 May 15;119(Pt 10):2073–83. Epub 2006 Apr 25
J Cell Sci 2006
Benenati G, Penkov S, Müller-Reichert T, Entchev EV, Kurzchalia TV
Two cytochrome P450s in Caenorhabditis elegans are essential for the organization of eggshell, correct execution of meiosis and the polarization of embryo.
Mech Dev. 2009 May-Jun;126(5–6):382–93. Epub 2009 Feb 11
Mech Develop 2006
Proszynski TJ, Klemm R, Bagnat M, Gaus K, Simons K
Plasma membrane polarization during mating in yeast cells.
J Cell Biol. 2006 Jun 19;173(6):861–6. Epub 2006 Jun 12
J Cell Biol 2006
Cisneros DA, Hung C, Franz CM, Muller DJ
Observing growth steps of collagen self-assembly by time-lapse high-resolution atomic force microscopy.
J Struct Biol. 2006 Jun;154(3):232–45. Epub 2006 Mar 20
J Struct Biol 2006
Khalimonchuk O, Ott M, Funes S, Ostermann K, Rödel G, Herrmann JM
Sequential processing of a mitochondrial tandem protein: insights into protein import in Schizosaccharomyces pombe.
Eukaryot Cell. 2006 Jul;5(7):997–1006
Eukaryot Cell 2006
Fish JL, Kosodo Y, Enard W, Pääbo S, Huttner WB
Aspm specifically maintains symmetric proliferative divisions of neuroepithelial cells.
Proc Natl Acad Sci U S A. 2006 Jul 5;103(27):10438–43. Epub 2006 Jun 23
Proc Natl Acad Sci 2006
Dinu CZ, Opitz J, Pompe W, Howard J, Mertig M, Diez S
Parallel manipulation of bifunctional DNA molecules on structured surfaces using kinesin-driven microtubules.
Small. 2006 Aug;2(8–9):1090–8
Small 2006
Erler A, Maresca M, Fu J, Stewart AF
Recombineering reagents for improved inducible expression and selection marker re-use in Schizosaccharomyces pombe.
Yeast. 2006 Aug;23(11):813–23
Yeast 2006
Ejsing CS, Duchoslav E, Sampaio J, Simons K, Bonner R, Thiele C, Ekroos K, Shevchenko A
Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning.
Anal Chem. 2006 Sep 1;78(17):6202–14
Anal Chem 2006
Schonegg S, Hyman AA
CDC-42 and RHO-1 coordinate acto-myosin contractility and PAR protein localization during polarity establishment in C. elegans embryos.
Development. 2006 Sep;133(18):3507–16. Epub 2006 Aug 9
Development 2006
Wielsch N, Thomas H, Surendranath V, Waridel P, Frank A, Pevzner P, Shevchenko A
Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches.
J Proteome Res. 2006 Sep;5(9):2448–56. PMID: 16944958 [PubMed – indexed for MEDLINE]
J Proteome Res 2006
Varga V, Helenius J, Tanaka K, Hyman AA, Tanaka TU, Howard J
Yeast kinesin-8 depolymerizes microtubules in a length-dependent manner.
Nat Cell Biol. 2006 Sep;8(9):957–62. Epub 2006 Aug 13
Nat Cell Biol 2006
Listerman I, Sapra AK, Neugebauer KM
Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells.
Nat Struct Mol Biol. 2006 Sep;13(9):815–22. Epub 2006 Aug 20
Nat Struct Mol Biol 2006
Kedrov A, Ziegler C, Muller DJ
Differentiating ligand and inhibitor interactions of a single antiporter.
J Mol Biol. 2006 Oct 6;362(5):925–32. Epub 2006 Jul 28
J Mol Biol 2006
Reuther C, Hajdo L, Tucker R, Kasprzak AA, Diez S
Biotemplated nanopatterning of planar surfaces with molecular motors.
Nano Lett. 2006 Oct;6(10):2177–83. PMID: 17034079 [PubMed – indexed for MEDLINE]
Nano Lett 2006
Sarov M, Schneider S, Pozniakovski A, Roguev A, Ernst S, Zhang Y, Hyman AA, Stewart AF
A recombineering pipeline for functional genomics applied to Caenorhabditis elegans.
Nat Methods. 2006 Oct;3(10):839–44
Nat Methods 2006
Demontis F, Habermann B, Dahmann C
PDZ-domain-binding sites are common among cadherins.
Dev Genes Evol. 2006 Nov;216(11):737–41. Epub 2006 Oct 5
Dev Genes Evol 2006
Schuck S, Gerl MJ, Ang A, Manninen A, Keller P, Mellman I, Simons K
Rab10 is involved in basolateral transport in polarized Madin-Darby canine kidney cells.
Traffic. 2007 Jan;8(1):47–60. Epub 2006 Nov 21
Traffic 2006
Balana B, Nicoletti C, Zahanich I, Graf EM, Christ T, Boxberger S, Ravens U
5-Azacytidine induces changes in electrophysiological properties of human mesenchymal stem cells.
Cell Res. 2006 Dec;16(12):949–60
Cell Res 2006
Witzel S, Zimyanin V, Carreira-Barbosa F, Tada M, Heisenberg CP
Wnt11 controls cell contact persistence by local accumulation of Frizzled 7 at the plasma membrane.
J Cell Biol. 2006 Dec 4;175(5):791–802. Epub 2006 Nov 27
J Cell Biol 2006
Schnapp E, Tanaka EM
Quantitative evaluation of morpholino-mediated protein knockdown of GFP, MSX1, and PAX7 during tail regeneration in Ambystoma mexicanum.
Dev Dyn. 2005 Jan;232(1):162–70
Dev Dynam 2005
Meder D, Shevchenko A, Simons K, Füllekrug J
Gp135/podocalyxin and NHERF-2 participate in the formation of a preapical domain during polarization of MDCK cells.
J Cell Biol. 2005 Jan 17;168(2):303–13. Epub 2005 Jan 10
J Cell Biol 2005
Kuerschner L, Ejsing CS, Ekroos K, Shevchenko A, Anderson KI, Thiele C
Polyene-lipids: a new tool to image lipids.
Nat Methods. 2005 Jan;2(1):39–45. Epub 2004 Dec 21
Nat Methods 2005
Kittler R, Pelletier L, Ma C, Poser I, Fischer S, Hyman AA, Buchholz F
RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells.
Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2396–401. Epub 2005 Feb 3
Proc Natl Acad Sci 2005
Cisneros DA, Oesterhelt D, Müller DJ
Probing origins of molecular interactions stabilizing the membrane proteins halorhodopsin and bacteriorhodopsin.
Structure. 2005 Feb;13(2):235–42
Structure 2005
Oelschlaegel T, Schwickart M, Matos J, Bogdanova A, Camasses A, Havlis J, Shevchenko A, Zachariae W
The yeast APC/C subunit Mnd2 prevents premature sister chromatid separation triggered by the meiosis-specific APC/C-Ama1.
Cell. 2005 Mar 25;120(6):773–88
Cell 2005
Shen J, Dahmann C
The role of Dpp signaling in maintaining the Drosophila anteroposterior compartment boundary.
Dev Biol. 2005 Mar 1;279(1):31–43
Dev Biol 2005
Noetzel TL, Drechsel DN, Hyman AA, Kinoshita K
A comparison of the ability of XMAP215 and tau to inhibit the microtubule destabilizing activity of XKCM1.
Philos Trans R Soc Lond B Biol Sci. 2005 Mar 29;360(1455):591–4
Philos Trans R Soc Lond B Biol Sci 2005
Meder D, Simons K
Cell biology. Ras on the roundabout.
Science. 2005 Mar 18;307(5716):1731–3. No abstract available
Science 2005
Shen J, Dahmann C
Extrusion of cells with inappropriate Dpp signaling from Drosophila wing disc epithelia.
Science. 2005 Mar 18;307(5716):1789–90
Science 2005
Kittler R, Buchholz F
Functional genomic analysis of cell division by endoribonuclease-prepared siRNAs.
Cell Cycle. 2005 Apr;4(4):564–7. Epub 2005 Apr 19. Review
Cell Cycle 2005
Kronekova Z, Rödel G
Organization of assembly factors Cbp3p and Cbp4p and their effect on bc(1) complex assembly in Saccharomyces cerevisiae.
Curr Genet. 2005 Apr;47(4):203–12. Epub 2005 Mar 10
Curr Genet 2005
Khalimonchuk O, Ostermann K, Rödel G
Evidence for the association of yeast mitochondrial ribosomes with Cox11p, a protein required for the Cu(B) site formation of cytochrome c oxidase.
Curr Genet. 2005 Apr;47(4):223–33. Epub 2005 Mar 18
Curr Genet 2005
Suchanek M, Radzikowska A, Thiele C
Photo-leucine and photo-methionine allow identification of protein-protein interactions in living cells.
Nat Methods. 2005 Apr;2(4):261–7. Epub 2005 Mar 23
Nat Methods 2005
Hoepfner S, Severin F, Cabezas A, Habermann B, Runge A, Gillooly D, Stenmark H, Zerial M
Modulation of receptor recycling and degradation by the endosomal kinesin KIF16B.
Cell. 2005 May 6;121(3):437–50
Cell 2005
Panáková D, Sprong H, Marois E, Thiele C, Eaton S
Lipoprotein particles are required for Hedgehog and Wingless signalling.
Nature. 2005 May 5;435(7038):58–65
Nature 2005
Langenberg T, Brand M
Lineage restriction maintains a stable organizer cell population at the zebrafish midbrain-hindbrain boundary.
Development. 2005 Jul;132(14):3209–16. Epub 2005 Jun 15
Development 2005
Schnapp E, Kragl M, Rubin L, Tanaka EM
Hedgehog signaling controls dorsoventral patterning, blastema cell proliferation and cartilage induction during axolotl tail regeneration.
Development. 2005 Jul;132(14):3243–53
Development 2005
Kedrov A, Krieg M, Ziegler C, Kuhlbrandt W, Muller DJ
Locating ligand binding and activation of a single antiporter.
EMBO Rep. 2005 Jul;6(7):668–74
EMBO Rep 2005
Riedel IH, Kruse K, Howard J
A self-organized vortex array of hydrodynamically entrained sperm cells.
Science. 2005 Jul 8;309(5732):300–3
Science 2005
Ozlü N, Srayko M, Kinoshita K, Habermann B, O'toole ET, Müller-Reichert T, Schmalz N, Desai A, Hyman AA
An essential function of the C. elegans ortholog of TPX2 is to localize activated aurora A kinase to mitotic spindles.
Dev Cell. 2005 Aug;9(2):237–48
Dev Cell 2005
Bringmann H, Hyman AA
A cytokinesis furrow is positioned by two consecutive signals.
Nature. 2005 Aug 4;436(7051):731–4
Nature 2005
Rink J, Ghigo E, Kalaidzidis Y, Zerial M
Rab conversion as a mechanism of progression from early to late endosomes.
Cell. 2005 Sep 9;122(5):735–49
Cell 2005
Zahanich I, Graf EM, Heubach JF, Hempel U, Boxberger S, Ravens U
Molecular and functional expression of voltage-operated calcium channels during osteogenic differentiation of human mesenchymal stem cells.
J Bone Miner Res. 2005 Sep;20(9):1637–46. Epub 2005 May 31
J Bone Miner Res 2005
Kovalchuk A, Senam S, Mauersberger S, Barth G
Tyl6, a novel Ty3/gypsy-like retrotransposon in the genome of the dimorphic fungus Yarrowia lipolytica.
Yeast. 2005 Sep;22(12):979–91
Yeast 2005
Ulrich F, Krieg M, Schötz EM, Link V, Castanon I, Schnabel V, Taubenberger A, Mueller D, Puech PH, Heisenberg CP
Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin.
Dev Cell. 2005 Oct;9(4):555–64
Dev Cell 2005
Kittler R, Heninger AK, Franke K, Habermann B, Buchholz F
Production of endoribonuclease-prepared short interfering RNAs for gene silencing in mammalian cells.
Nat Methods. 2005 Oct;2(10):779–84. No abstract available
Nat Methods 2005
Kalvodova L, Kahya N, Schwille P, Ehehalt R, Verkade P, Drechsel D, Simons K
Lipids as modulators of proteolytic activity of BACE: involvement of cholesterol, glycosphingolipids, and anionic phospholipids in vitro.
J Biol Chem. 2005 Nov 4;280(44):36815–23. Epub 2005 Aug 22
J Cell Biol 2005
Glaser S, Anastassiadis K, Stewart AF
Current issues in mouse genome engineering.
Nat Genet. 2005 Nov;37(11):1187–93. Review
Nat Genetics 2005
Liska AJ, Sunyaev S, Shilov IN, Schaeffer DA, Shevchenko A
Error-tolerant EST database searches by tandem mass spectrometry and multiTag software.
Proteomics. 2005 Nov;5(16):4118–22
Proteomics 2005
Classen AK, Anderson KI, Marois E, Eaton S
Hexagonal packing of Drosophila wing epithelial cells by the planar cell polarity pathway.
Dev Cell. 2005 Dec;9(6):805–17
Dev Cell 2005
Khalimonchuk O, Rödel G
Biogenesis of cytochrome c oxidase.
Mitochondrion. 2005 Dec;5(6):363–88. Epub 2005 Sep 29. Review
Mitochondrion 2005
Proszynski TJ, Klemm RW, Gravert M, Hsu PP, Gloor Y, Wagner J, Kozak K, Grabner H, Walzer K, Bagnat M, Simons K, Walch-Solimena C
A genome-wide visual screen reveals a role for sphingolipids and ergosterol in cell surface delivery in yeast.
Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):17981–6. Epub 2005 Dec 5
Proc Natl Acad Sci 2005
Roguev A, Shevchenko A, Schaft D, Thomas H, Stewart AF, Shevchenko A
A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe.
Mol Cell Proteomics. 2004 Feb;3(2):125–32. Epub 2003 Nov 15
Mol Cell Proteomics 2004
Proszynski TJ, Simons K, Bagnat M
O-glycosylation as a sorting determinant for cell surface delivery in yeast.
Mol Biol Cell. 2004 Apr;15(4):1533–43. Epub 2004 Jan 23
Mol Biol Cell 2004
Schwickart M, Havlis J, Habermann B, Bogdanova A, Camasses A, Oelschlaegel T, Shevchenko A, Zachariae W
Swm1/Apc13 is an evolutionarily conserved subunit of the anaphase-promoting complex stabilizing the association of Cdc16 and Cdc27.
Mol Cell Biol. 2004 Apr;24(8):3562–76
Mol Cell Biol 2004
Schuck S, Manninen A, Honsho M, Füllekrug J, Simons K
Generation of single and double knockdowns in polarized epithelial cells by retrovirus-mediated RNA interference.
Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4912–7. Epub 2004 Mar 29
Proc Natl Acad Sci 2004
Straube WL, Brockes JP, Drechsel DN, Tanaka EM
Plasticity and reprogramming of differentiated cells in amphibian regeneration: partial purification of a serum factor that triggers cell cycle re-entry in differentiated muscle cells.
Cloning Stem Cells. 2004;6(4):333–44
Cloning Stem Cells 2004
Kedrov A, Ziegler C, Janovjak H, Kühlbrandt W, Müller DJ
Controlled unfolding and refolding of a single sodium-proton antiporter using atomic force microscopy.
J Mol Biol. 2004 Jul 23;340(5):1143–52
J Mol Biol 2004
Dudu V, Pantazis P, González-Gaitán M
Membrane traffic during embryonic development: epithelial formation, cell fate decisions and differentiation.
Curr Opin Cell Biol. 2004 Aug;16(4):407–14. Review
Curr Opin Cell Biol 2004
Schnatwinkel C, Christoforidis S, Lindsay MR, Uttenweiler-Joseph S, Wilm M, Parton RG, Zerial M
The Rab5 effector Rabankyrin-5 regulates and coordinates different endocytic mechanisms.
PLoS Biol. 2004 Sep;2(9):E261. Epub 2004 Aug 24
PLoS Biol 2004
Khattak S, Darai G, Rösen-Wolff A
Puumala virus nucleocapsid protein expressed in transgenic plants is not immunogenic after oral administration.
Virus Genes. 2004 Aug;29(1):109–16
Virus Genes 2004
Liska AJ, Shevchenko A, Pick U, Katz A
Enhanced photosynthesis and redox energy production contribute to salinity tolerance in Dunaliella as revealed by homology-based proteomics.
Plant Physiol. 2004 Sep;136(1):2806–17. Epub 2004 Aug 27
Plant Physiol 2004
Liska AJ, Popov AV, Sunyaev S, Coughlin P, Habermann B, Shevchenko A, Bork P, Karsenti E, Shevchenko A
Homology-based functional proteomics by mass spectrometry: application to the Xenopus microtubule-associated proteome.
Proteomics. 2004 Sep;4(9):2707–21
Proteomics 2004
Konstantinova I, Lammert E
Microvascular development: learning from pancreatic islets.
Bioessays. 2004 Oct;26(10):1069–75. Review
Bioessays 2004
Trajkovski M, Mziaut H, Altkrüger A, Ouwendijk J, Knoch KP, Müller S, Solimena M
Nuclear translocation of an ICA512 cytosolic fragment couples granule exocytosis and insulin expression in {beta}-cells.
J Cell Biol. 2004 Dec 20;167(6):1063–74. Epub 2004 Dec 13
J Cell Biol 2004
Schuck S, Simons K
Polarized sorting in epithelial cells: raft clustering and the biogenesis of the apical membrane.
J Cell Sci. 2004 Dec 1;117(Pt 25):5955–64. Review
J Cell Sci 2004
Kittler R, Putz G, Pelletier L, Poser I, Heninger AK, Drechsel D, Fischer S, Konstantinova I, Habermann B, Grabner H, Yaspo ML, Himmelbauer H, Korn B, Neugebauer K, Pisabarro MT, Buchholz F
An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division.
Nature. 2004 Dec 23;432(7020):1036–40. PMID: 15616564 [PubMed – indexed for MEDLINE]
Nature 2004
Liska AJ, Shevchenko A
Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications.
Proteomics. 2003 Jan;3(1):19–28. Review
Proteomics 2003
Roguev A, Schaft D, Shevchenko A, Aasland R, Shevchenko A, Stewart AF
High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts.
J Biol Chem. 2003 Mar 7;278(10):8487–93. Epub 2002 Dec 17
J Biol Chem 2003
van Breugel M, Drechsel D, Hyman A
Stu2p, the budding yeast member of the conserved Dis1/XMAP215 family of microtubule-associated proteins is a plus end-binding microtubule destabilizer.
J Cell Biol. 2003 Apr 28;161(2):359–69
J Cell Biol 2003
Siekmann AF, Brand M
Distinct tissue-specificity of three zebrafish ext1 genes encoding proteoglycan modifying enzymes and their relationship to somitic Sonic hedgehog signaling.
Dev Dyn. 2005 Feb;232(2):498–505
Dev Dynam 2003
Schuck S, Honsho M, Ekroos K, Shevchenko A, Simons K
Resistance of cell membranes to different detergents.
Proc Natl Acad Sci U S A. 2003 May 13;100(10):5795–800. Epub 2003 Apr 29
Proc Natl Acad Sci 2003
Kotovic KM, Lockshon D, Boric L, Neugebauer KM
Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast.
Mol Cell Biol. 2003 Aug;23(16):5768–79
Mol Cell Biol 2003
Kittler R, Buchholz F
RNA interference: gene silencing in the fast lane.
Semin Cancer Biol. 2003 Aug;13(4):259–65. Review
Semin Cancer Biol 2003
Nikolova G, Lammert E
Interdependent development of blood vessels and organs.
Cell Tissue Res. 2003 Oct;314(1):33–42. Epub 2003 Aug 1. Review
Cell Tissue Res 2003
Langenberg T, Brand M, Cooper MS
Imaging brain development and organogenesis in zebrafish using immobilized embryonic explants.
Dev Dyn. 2003 Nov;228(3):464–74
Dev Dynam 2003
Ulrich F, Concha ML, Heid PJ, Voss E, Witzel S, Roehl H, Tada M, Wilson SW, Adams RJ, Soll DR, Heisenberg CP
Slb/Wnt11 controls hypoblast cell migration and morphogenesis at the onset of zebrafish gastrulation.
Development. 2003 Nov;130(22):5375–84. Epub 2003 Sep 16
Development 2003
Balana B, Dobrev D, Wettwer E, Christ T, Knaut M, Ravens U
Decreased ATP-sensitive K(+) current density during chronic human atrial fibrillation.
J Mol Cell Cardiol. 2003 Dec;35(12):1399–405
J Mol Cell Cardiol 2003
Khattak S, Darai G, Süle S, Rösen-Wolff A
Characterization of expression of Puumala virus nucleocapsid protein in transgenic plants.
Intervirology. 2002;45(4–6):334–9
Intervirology 2002
Roguev A, Schaft D, Shevchenko A, Pijnappel WW, Wilm M, Aasland R, Stewart AF
The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4.
EMBO J. 2001 Dec 17;20(24):7137–48
EMBO J 2001

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